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Series GSE26229 Query DataSets for GSE26229
Status Public on May 20, 2011
Title Transcriptional profiling of ex vivo isolated inflammed mouse lymphatic endothelial cells
Organism Mus musculus
Experiment type Expression profiling by array
Summary Chemokines and adhesion molecules upregulated in lymphatic endothelial cells (LECs) during tissue inflammation are believed to enhance dendritic cell (DC) migration to draining lymph nodes (dLNs), but the in vivo control of this process is not well understood. By performing transcriptional profiling of LECs isolated from murine skin, we found that inflammation induced by a contact hypersensitivity (CHS) response upregulated the adhesion molecules ICAM-1 and VCAM-1 and inflammatory chemokines in LECs. Furthermore, lymphatic lineage markers like Prox-1, VEGFR3 and LYVE-1 were significantly downregulated during CHS. By contrast, skin inflammation induced by Complete Freund’s adjuvant (CFA) induced a different pattern of chemokine and lymphatic marker gene expression and almost no ICAM-1 up-regulation in LECs. In FITC painting experiments, DC migration to dLNs was more strongly increased in CFA- as compared to CHS-induced inflammation. Interestingly, DC migration did not correlate with the induction of CCL21 and ICAM-1 in LECs. However, the requirement for CCR7 signaling became further pronounced during inflammation, whereas CCR7-independent signals only had a minor role in enhancing DC migration. Collectively, these findings indicate that inflammation-induced DC migration is stimulus-dependent and only moderately enhanced by LEC-induced genes other than CCL21.
 
Overall design Mouse ear skin single-cell suspensions were prepared by a fast protocol that minimizes the RNA degradation. Fluorescence-activated cell sorting (FACS) was used to sort lymphatic endothelial cells (LEC) from CHS inflammed and control skin. 4 pairs (each with one control and one CHS inflammed sample, sorted and extracted on the same day) of LECs were chosen based on the quality of extracted and amplified material. This gave 8 samples to analyze (4 biological replicates in each condition). Each sample was sorted from 3 mice.
 
Contributor(s) Vigl B, Halin C
Citation(s) 21596851
Submission date Dec 21, 2010
Last update date Feb 11, 2019
Contact name benjamin vigl
E-mail(s) benjamin.vigl@pharma.ethz.ch, maria.iolyeva@pharma.ethz.ch
Phone 0041446337445
Organization name ETH Zurich
Department Institute of Pharmaceutical Sciences
Lab Halin
Street address W.-Pauli-Str. 10, HCI, G490
City Zurich
ZIP/Postal code 8093 Zurich
Country Switzerland
 
Platforms (1)
GPL1261 [Mouse430_2] Affymetrix Mouse Genome 430 2.0 Array
Samples (8)
GSM643919 Mouse_ear_skin_LEC_untreated_rep1
GSM643920 Mouse_ear_skin_LEC_inflamed_rep1
GSM643921 Mouse_ear_skin_LEC_untreated_rep2
Relations
BioProject PRJNA134995

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE26229_RAW.tar 27.1 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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