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Series GSE261098 Query DataSets for GSE261098
Status Public on Mar 08, 2024
Title A cluster-randomized trial of water, sanitation, handwashing and nutritional interventions on stress and epigenetic programming
Organism Homo sapiens
Experiment type Other
Summary A regulated stress response is essential for healthy child growth and development trajectories. We conducted a cluster-randomized trial in rural Bangladesh (funded by the Bill & Melinda Gates Foundation, ClinicalTrials.gov NCT01590095) to assess the effects of an integrated nutritional, water, sanitation, and handwashing intervention on child health. We previously reported on the primary outcomes of the trial, linear growth and caregiver-reported diarrhea. Here, we assessed additional prespecified outcomes: physiological stress response, oxidative stress, and DNA methylation (N = 759, ages 1-2 years). Eight neighboring pregnant women were grouped into a study cluster. Eight geographically adjacent clusters were block-randomized into the control or the combined nutrition, water, sanitation, and handwashing (N+WSH) intervention group (receiving nutritional counseling and lipid-based nutrient supplements, chlorinated drinking water, upgraded sanitation, and handwashing with soap). Participants and data collectors were not masked, but analyses were masked. There were 358 children (68 clusters) in the control group and 401 children (63 clusters) in the intervention group. We measured four F2-isoprostanes isomers (iPF(2α)-III; 2,3-dinor-iPF(2α)-III; iPF(2α)-VI; 8,12-iso-iPF(2α)-VI), salivary alpha-amylase and cortisol, and methylation of the glucocorticoid receptor (NR3C1) exon 1F promoter including the NGFI-A binding site. Compared with control, the N+WSH group had lower concentrations of F2-isoprostanes isomers (differences ranging from -0.16 to -0.19 log ng/mg of creatinine, P<0.01), elevated post-stressor cortisol (0.24 log µg/dl; P<0.01), higher cortisol residualized gain scores (0.06 µg/dl; P=0.023), and decreased methylation of the NGFI-A binding site (-0.04; P=0.037). The N+WSH intervention enhanced adaptive responses of the physiological stress system in early childhood.
 
Overall design 745 samples were analyzed for DNA methylation; no replicates; there was a control and a Nutrition + WASH arm
 
Contributor(s) Meyer A, Yan L, Tan ST, Mertens AN, Lin A
Citation(s) 38670986
Submission date Mar 07, 2024
Last update date May 24, 2024
Contact name Audrie Lin
E-mail(s) audrielin@ucsc.edu
Organization name University of California, Santa Cruz
Department Microbiology and Environmental Toxicology
Lab Lin Lab
Street address METX, 1156 High St.
City Santa Cruz
State/province CA
ZIP/Postal code 95064
Country USA
 
Platforms (1)
GPL34282 Pyromark MD Pyrosequencing
Samples (745)
GSM8134349 Participant 999051
GSM8134350 Participant 999011
GSM8134351 Participant 999071
Relations
BioProject PRJNA1085285

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE261098_Matrix_Table_Processed_Data_v1_2024.03.06.xlsx 113.7 Kb (ftp)(http) XLSX
GSE261098_raw_files.tar.gz 48.3 Mb (ftp)(http) TAR

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