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Series GSE260925 Query DataSets for GSE260925
Status Public on Jul 08, 2024
Title Unveiling the Role of KSHV-Infected Human Mesenchymal Stem Cells in Kaposi's Sarcoma Initiation
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Kaposi's sarcoma (KS) may derive from Kaposi's Sarcoma Herpesvirus (KSHV)-infected human Mesenchymal Stem Cells (hMSCs) that migrate to sites characterized by inflammation and angiogenesis, promoting the initiation of KS. By analyzing the RNA sequences of KSHV-infected primary hMSCs, we have identified specific cell subpopulations, mechanisms, and conditions involved in the initial stages of KSHV-induced transformation and reprogramming of hMSCs into KS progenitor cells. Under pro-angiogenic environmental conditions, KSHV can reprogram hMSCs to exhibit gene expression profiles more similar to KS tumors, activating cell cycle progression, cytokine signaling pathways, and endothelial differentiation indicating the involvement of KSHV infection in inducing the Mesenchymal-to-Endothelial (MEndT) transition of hMSCs. This finding underscores the significance of this condition in facilitating KSHV-induced proliferation and reprogramming of hMSCs towards MEndT and closer to KS gene expression profiles, providing further evidence of these cell subpopulations as precursors of KS cells that thrive in a pro-angiogenic environment.
 
Overall design To evaluate the impact of different growth conditions in KSHV infection of bone marrow-derived human Mesenchymal Stem Cells (hMSC), we infected these cells with KSHV in different environments. We performed KSHV (KSHVr.219) infection of hMSC in MEM alpha medium, basal MSC growth conditions (MSC-KSHV MEM), or KS-like pro-angiogenic conditions (MSC-KSHV KS). After 72 hours of infection (short-term infection) or after one month of infection and selection for KSHV-infected cells (long-term infection), we extracted RNA to perform a whole RNA-sequencing analysis. As controls for both time points, we included mock-infected hMSCs growing under basal MSC growth conditions (MSC MEM) and mock-infected hMSCs growing in KS-like pro-angiogenic conditions (MSC KS) to study the effects of the pro-angiogenic environment.
 
Contributor(s) Naipauer J, Lacunza E, Abba M
Citation(s) 38773828
NIH grant(s)
Grant ID Grant title Affiliation Name
U54 CA221208 UM CFAR SCCC Argentina Consortium for research and training in Virally Induced AIDS Malignancies University of Miami School of Medicine Omar Adrian Coso
U54 CA221208 UM CFAR SCCC Argentina Consortium for research and training in Virally Induced AIDS Malignancies University of Miami School of Medicine Juan Carlos Ramos
Submission date Mar 05, 2024
Last update date Jul 08, 2024
Contact name Martin Carlos Abba
E-mail(s) mcabba@gmail.com
Phone 054-221-4236711
Organization name School of Medical Sciences - UNLP
Lab CINIBA
Street address 60 y 120
City La Plata
State/province Buenos Aires
ZIP/Postal code 1900
Country Argentina
 
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (24)
GSM8128112 MSC-Control-KS-LT_1
GSM8128113 MSC-Control-KS-LT_2
GSM8128114 MSC-Control-KS-LT_3
Relations
BioProject PRJNA1084013

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE260925_raw_counts.csv.gz 879.4 Kb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA

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