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Series GSE258862 Query DataSets for GSE258862
Status Public on Feb 27, 2024
Title TF ChIP-seq from whole organism (ENCSR476LGM)
Project modENCODE
Organism Caenorhabditis elegans
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary ChIP-seq against eGFP-pros-1 in late embryonic worms.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
 
Overall design https://www.encodeproject.org/ENCSR476LGM/
 
Citation(s) 22955616
BioProject PRJNA63463
Submission date Feb 25, 2024
Last update date Sep 02, 2024
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platforms (1)
GPL13776 Illumina Genome Analyzer IIx (Caenorhabditis elegans)
Samples (2)
GSM8110604 TF ChIP-seq from whole organism (ENCLB635XPO)
GSM8110605 TF ChIP-seq from whole organism (ENCLB926UJU)
Relations
Reanalyzed by GSE276166

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE258862_ENCFF007RPJ_optimal_IDR_thresholded_peaks_ce10.bed.gz 15.1 Kb (ftp)(http) BED
GSE258862_ENCFF014JXV_read-depth_normalized_signal_ce11.bigWig 9.6 Mb (ftp)(http) BIGWIG
GSE258862_ENCFF099WUH_signal_of_unique_reads_ce10.bigWig 9.6 Mb (ftp)(http) BIGWIG
GSE258862_ENCFF145POB_control_normalized_signal_ce11.bigWig 9.8 Mb (ftp)(http) BIGWIG
GSE258862_ENCFF195GRL_peaks_and_background_as_input_for_IDR_ce11.bigBed 1.2 Mb (ftp)(http) BIGBED
GSE258862_ENCFF250OYG_optimal_IDR_thresholded_peaks_ce11.bed.gz 14.9 Kb (ftp)(http) BED
GSE258862_ENCFF359PGD_peaks_and_background_as_input_for_IDR_ce10.bed.gz 760.9 Kb (ftp)(http) BED
GSE258862_ENCFF516TIT_optimal_IDR_thresholded_peaks_ce10.bigBed 67.8 Kb (ftp)(http) BIGBED
GSE258862_ENCFF616MUD_control_normalized_signal_ce10.bigWig 9.8 Mb (ftp)(http) BIGWIG
GSE258862_ENCFF639HJB_signal_of_unique_reads_ce11.bigWig 9.6 Mb (ftp)(http) BIGWIG
GSE258862_ENCFF709RFX_peaks_and_background_as_input_for_IDR_ce11.bed.gz 762.5 Kb (ftp)(http) BED
GSE258862_ENCFF866IYX_peaks_and_background_as_input_for_IDR_ce10.bigBed 1.3 Mb (ftp)(http) BIGBED
GSE258862_ENCFF870UPX_optimal_IDR_thresholded_peaks_ce11.bigBed 67.5 Kb (ftp)(http) BIGBED
GSE258862_ENCFF938LAU_read-depth_normalized_signal_ce10.bigWig 9.6 Mb (ftp)(http) BIGWIG
GSE258862_RAW.tar 124.0 Mb (http)(custom) TAR (of BED, BIGBED, BIGWIG, TXT)
Raw data are available in SRA

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