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Series GSE258623

Query DataSets for GSE258623

Status

Public on Feb 27, 2024

Title

TF ChIP-seq from whole organism (ENCSR955ZWH)

Project

modENCODE

Organism

Caenorhabditis elegans

Experiment type

Genome binding/occupancy profiling by high throughput sequencing

Summary

ChIP-seq of transgenic worms expressing T07F8.4-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf

Overall design

https://www.encodeproject.org/ENCSR955ZWH/

Citation(s)

22955616

BioProject

PRJNA63463

Submission date

Feb 25, 2024

Last update date

Sep 02, 2024

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platforms (1)

GPL18245

Illumina HiSeq 2500 (Caenorhabditis elegans)

Samples (2)

GSM8110111	TF ChIP-seq from whole organism (ENCLB589EUR)
GSM8110112	TF ChIP-seq from whole organism (ENCLB528WAD)

Relations

Reanalyzed by

GSE276166

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML
Series Matrix File(s)	TXT

Supplementary file	Size	Download	File type/resource
GSE258623_ENCFF059SZX_read-depth_normalized_signal_ce11.bigWig	9.6 Mb	(ftp)(http)	BIGWIG
GSE258623_ENCFF092UIR_read-depth_normalized_signal_ce10.bigWig	9.6 Mb	(ftp)(http)	BIGWIG
GSE258623_ENCFF118UZG_peaks_and_background_as_input_for_IDR_ce10.bigBed	761.9 Kb	(ftp)(http)	BIGBED
GSE258623_ENCFF204OYH_optimal_IDR_thresholded_peaks_ce11.bigBed	67.6 Kb	(ftp)(http)	BIGBED
GSE258623_ENCFF254DNW_control_normalized_signal_ce11.bigWig	9.8 Mb	(ftp)(http)	BIGWIG
GSE258623_ENCFF268QKY_peaks_and_background_as_input_for_IDR_ce11.bed.gz	434.0 Kb	(ftp)(http)	BED
GSE258623_ENCFF392KAL_peaks_and_background_as_input_for_IDR_ce10.bed.gz	433.8 Kb	(ftp)(http)	BED
GSE258623_ENCFF438LMG_signal_of_unique_reads_ce10.bigWig	9.5 Mb	(ftp)(http)	BIGWIG
GSE258623_ENCFF451WQG_signal_of_unique_reads_ce11.bigWig	9.6 Mb	(ftp)(http)	BIGWIG
GSE258623_ENCFF514NZP_optimal_IDR_thresholded_peaks_ce11.bed.gz	13.8 Kb	(ftp)(http)	BED
GSE258623_ENCFF520MDF_peaks_and_background_as_input_for_IDR_ce11.bigBed	762.2 Kb	(ftp)(http)	BIGBED
GSE258623_ENCFF596QOM_optimal_IDR_thresholded_peaks_ce10.bed.gz	17.7 Kb	(ftp)(http)	BED
GSE258623_ENCFF659WZL_control_normalized_signal_ce10.bigWig	9.8 Mb	(ftp)(http)	BIGWIG
GSE258623_ENCFF961ZXV_optimal_IDR_thresholded_peaks_ce10.bigBed	73.4 Kb	(ftp)(http)	BIGBED
GSE258623_RAW.tar	121.0 Mb	(http)(custom)	TAR (of BED, BIGBED, BIGWIG, TXT)
Raw data are available in SRA