NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE257625 Query DataSets for GSE257625
Status Public on Feb 27, 2024
Title TF ChIP-seq from whole organism (ENCSR685QDW)
Project modENCODE
Organism Caenorhabditis elegans
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary ChIP-seq against eGFP-nhr-28 in L4 larva worms.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
 
Overall design https://www.encodeproject.org/ENCSR685QDW/
 
Citation(s) 22955616
BioProject PRJNA63463
Submission date Feb 25, 2024
Last update date Sep 02, 2024
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platforms (1)
GPL13776 Illumina Genome Analyzer IIx (Caenorhabditis elegans)
Samples (2)
GSM8108274 TF ChIP-seq from whole organism (ENCLB672CSI)
GSM8108275 TF ChIP-seq from whole organism (ENCLB077ADV)
Relations
Reanalyzed by GSE276166

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE257625_ENCFF049VYW_optimal_IDR_thresholded_peaks_ce11.bed.gz 165.2 Kb (ftp)(http) BED
GSE257625_ENCFF128RLY_read-depth_normalized_signal_ce11.bigWig 9.7 Mb (ftp)(http) BIGWIG
GSE257625_ENCFF288BMD_optimal_IDR_thresholded_peaks_ce11.bigBed 348.1 Kb (ftp)(http) BIGBED
GSE257625_ENCFF295BWQ_optimal_IDR_thresholded_peaks_ce10.bed.gz 164.1 Kb (ftp)(http) BED
GSE257625_ENCFF345GIO_peaks_and_background_as_input_for_IDR_ce11.bigBed 1.2 Mb (ftp)(http) BIGBED
GSE257625_ENCFF435EOF_read-depth_normalized_signal_ce10.bigWig 9.7 Mb (ftp)(http) BIGWIG
GSE257625_ENCFF552HLL_signal_of_unique_reads_ce10.bigWig 9.7 Mb (ftp)(http) BIGWIG
GSE257625_ENCFF713QSA_peaks_and_background_as_input_for_IDR_ce11.bed.gz 701.9 Kb (ftp)(http) BED
GSE257625_ENCFF732SMO_peaks_and_background_as_input_for_IDR_ce10.bed.gz 702.2 Kb (ftp)(http) BED
GSE257625_ENCFF733XYN_control_normalized_signal_ce11.bigWig 9.8 Mb (ftp)(http) BIGWIG
GSE257625_ENCFF795RMP_peaks_and_background_as_input_for_IDR_ce10.bigBed 1.2 Mb (ftp)(http) BIGBED
GSE257625_ENCFF807QHK_signal_of_unique_reads_ce11.bigWig 9.7 Mb (ftp)(http) BIGWIG
GSE257625_ENCFF896XOI_control_normalized_signal_ce10.bigWig 9.8 Mb (ftp)(http) BIGWIG
GSE257625_ENCFF980TGH_optimal_IDR_thresholded_peaks_ce10.bigBed 346.5 Kb (ftp)(http) BIGBED
GSE257625_RAW.tar 124.2 Mb (http)(custom) TAR (of BED, BIGBED, BIGWIG, TXT)
Raw data are available in SRA

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap