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Series GSE257085

Query DataSets for GSE257085

Status

Public on Feb 27, 2024

Title

TF ChIP-seq from whole organism (ENCSR163NNI)

Project

modENCODE

Organism

Drosophila melanogaster

Experiment type

Genome binding/occupancy profiling by high throughput sequencing

Summary

ChIP-seq on transgenic flies expressing bowl-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf

Overall design

https://www.encodeproject.org/ENCSR163NNI/

Citation(s)

22955616

BioProject

PRJNA63463

Submission date

Feb 24, 2024

Last update date

Feb 27, 2024

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platforms (1)

GPL25244

Illumina NovaSeq 6000 (Drosophila melanogaster)

Samples (2)

GSM8107071	TF ChIP-seq from whole organism (ENCLB199LSU)
GSM8107072	TF ChIP-seq from whole organism (ENCLB168EVT)

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML
Series Matrix File(s)	TXT

Supplementary file	Size	Download	File type/resource
GSE257085_ENCFF278UBV_IDR_ranked_peaks_dm6.bed.gz	5.8 Mb	(ftp)(http)	BED
GSE257085_ENCFF296KXK_conservative_IDR_thresholded_peaks_dm6.bigBed	88.9 Kb	(ftp)(http)	BIGBED
GSE257085_ENCFF310KLN_IDR_ranked_peaks_dm6.bed.gz	5.6 Mb	(ftp)(http)	BED
GSE257085_ENCFF468LXG_IDR_thresholded_peaks_dm6.bigBed	121.9 Kb	(ftp)(http)	BIGBED
GSE257085_ENCFF516NSF_fold_change_over_control_dm6.bigWig	306.9 Mb	(ftp)(http)	BIGWIG
GSE257085_ENCFF569VMC_signal_p-value_dm6.bigWig	270.5 Mb	(ftp)(http)	BIGWIG
GSE257085_ENCFF746DXM_IDR_thresholded_peaks_dm6.bed.gz	39.6 Kb	(ftp)(http)	BED
GSE257085_ENCFF779NNL_conservative_IDR_thresholded_peaks_dm6.bed.gz	28.4 Kb	(ftp)(http)	BED
GSE257085_RAW.tar	976.2 Mb	(http)(custom)	TAR (of BED, BIGBED, BIGWIG, TXT)
Raw data are available in SRA