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Series GSE256882

Query DataSets for GSE256882

Status

Public on Feb 27, 2024

Title

TF ChIP-seq from whole organism (ENCSR216TTW)

Project

modENCODE

Organism

Drosophila melanogaster

Experiment type

Genome binding/occupancy profiling by high throughput sequencing

Summary

ChIP-seq on transgenic flies expressing Doc3-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf

Overall design

https://www.encodeproject.org/ENCSR216TTW/

Citation(s)

22955616

BioProject

PRJNA63463

Submission date

Feb 24, 2024

Last update date

Feb 27, 2024

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platforms (1)

GPL25244

Illumina NovaSeq 6000 (Drosophila melanogaster)

Samples (3)

GSM8106727	TF ChIP-seq from whole organism (ENCLB135RBE)
GSM8106728	TF ChIP-seq from whole organism (ENCLB088WJL)
GSM8106729	TF ChIP-seq from whole organism (ENCLB119COA)

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML
Series Matrix File(s)	TXT

Supplementary file	Size	Download	File type/resource
GSE256882_ENCFF101ZQT_conservative_IDR_thresholded_peaks_dm6.bigBed	135.5 Kb	(ftp)(http)	BIGBED
GSE256882_ENCFF258JOT_signal_p-value_dm6.bigWig	289.0 Mb	(ftp)(http)	BIGWIG
GSE256882_ENCFF306LKW_IDR_thresholded_peaks_dm6.bed.gz	44.5 Kb	(ftp)(http)	BED
GSE256882_ENCFF371TZU_IDR_ranked_peaks_dm6.bed.gz	3.4 Mb	(ftp)(http)	BED
GSE256882_ENCFF612QPX_fold_change_over_control_dm6.bigWig	332.0 Mb	(ftp)(http)	BIGWIG
GSE256882_ENCFF644ASM_IDR_thresholded_peaks_dm6.bed.gz	41.8 Kb	(ftp)(http)	BED
GSE256882_ENCFF658XJL_IDR_thresholded_peaks_dm6.bigBed	147.3 Kb	(ftp)(http)	BIGBED
GSE256882_ENCFF750QZM_IDR_thresholded_peaks_dm6.bigBed	123.8 Kb	(ftp)(http)	BIGBED
GSE256882_ENCFF752SDR_IDR_ranked_peaks_dm6.bed.gz	5.4 Mb	(ftp)(http)	BED
GSE256882_ENCFF765IMG_IDR_ranked_peaks_dm6.bed.gz	2.8 Mb	(ftp)(http)	BED
GSE256882_ENCFF767GYN_IDR_thresholded_peaks_dm6.bigBed	127.7 Kb	(ftp)(http)	BIGBED
GSE256882_ENCFF822WIW_IDR_ranked_peaks_dm6.bed.gz	6.8 Mb	(ftp)(http)	BED
GSE256882_ENCFF851OUT_conservative_IDR_thresholded_peaks_dm6.bed.gz	50.6 Kb	(ftp)(http)	BED
GSE256882_ENCFF899OBV_IDR_thresholded_peaks_dm6.bed.gz	63.3 Kb	(ftp)(http)	BED
GSE256882_RAW.tar	1.3 Gb	(http)(custom)	TAR (of BED, BIGBED, BIGWIG, TXT)
Raw data are available in SRA