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Series GSE254542 Query DataSets for GSE254542
Status Public on Oct 03, 2024
Title T-lymphocyte recruitment and retention in lichen planus
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Lichen planus (LP) is a chronic, debilitating, inflammatory disease of the skin and mucous membranes that affects 1-2% of Americans. Its molecular pathogenesis remains poorly understood, and there are no FDA-approved treatments. We performed single cell RNA sequencing on blood and affected and unaffected skin from 7 LP patients. LP affected skin exhibited a robust immune infiltrate primarily composed of CD8 T-cells. These cells were specifically recruited by cytokines secreted by both superficial and dermal layers of skin. Basal keratinocytes and fibroblasts secrete CXCL9 and CXCL10, and fibroblasts secrete CCL19. Molecular analysis of LP skin and blood samples increased our understanding of disease pathogenesis and identified CCL19 as a new therapeutic target for treatment.
 
Overall design scRNA-seq of Human PBMCs, Human skin cells
Web link https://pubmed.ncbi.nlm.nih.gov/39190494/
 
Contributor(s) Sati S, Kersh AE, Leung TH
Citation(s) 39190494
Submission date Jan 30, 2024
Last update date Oct 04, 2024
Contact name Satish Sati
E-mail(s) satisatish16@gmail.com
Phone +12675863881
Organization name University of Pennsylvania
Department Dermatology
Lab Thomas Leung
Street address 421 Curie Blvd, BRB 1039
City Philadelphia
State/province Pennsylvania
ZIP/Postal code 19104
Country USA
 
Platforms (1)
GPL28038 DNBSEQ-G400 (Homo sapiens)
Samples (20)
GSM8045696 LP patient 1 affected skin scRNA-seq
GSM8045697 LP patient 2 affected skin scRNA-seq
GSM8045698 LP patient 3 affected skin scRNA-seq
Relations
BioProject PRJNA1071003

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE254542_RAW.tar 1.2 Gb (http)(custom) TAR (of ZIP)
SRA Run SelectorHelp
Raw data are available in SRA

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