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Series GSE252862 Query DataSets for GSE252862
Status Public on Apr 17, 2024
Title Prophage-encoded methyltransferase upregulates virulence to drive adaptation in an outbreak of community-acquired methicillin-resistant Staphylococcus aureus
Organism Staphylococcus aureus
Experiment type Expression profiling by high throughput sequencing
Summary To determine the effects of phage adenine methyltransferase (pamA) on gene expression in WT USA300 (LAC*)
 
Overall design Comparative gene expression analysis of WT::pamA (USA300 LAC* containing a single copy of constituatively expressed pamA) and WT::EV control.
 
Contributor(s) Ulrich RJ, Shopsin B
Citation(s) 38659881
Submission date Jan 09, 2024
Last update date May 17, 2024
Contact name Robert Ulrich
E-mail(s) Robert.Ulrich@nyulangone.org
Organization name NYU Langone Health
Street address 430 East 29th Street, Room 507
City New York
State/province NY
ZIP/Postal code 10016
Country USA
 
Platforms (1)
GPL27158 Illumina NovaSeq 6000 (Staphylococcus aureus)
Samples (5)
GSM8009011 WT::pamA biological replicate A
GSM8009012 WT::pamA biological replicate B
GSM8009013 WT::pamA biological replicate C
Relations
BioProject PRJNA1062845

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE252862_featureCounts.tsv.gz 60.0 Kb (ftp)(http) TSV
SRA Run SelectorHelp
Raw data are available in SRA

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