|
| Status |
Public on Mar 31, 2024 |
| Title |
Nanopore-based full-length transcriptome sequencing of yak (Bos grunniens) testis |
| Organisms |
Bos grunniens; Bos grunniens x Bos taurus |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Alternative splicing (AS) is strictly regulated during cell differentiation and development. AS events are common in the testis, but the splicing regulation in spermatogenesis is still unclear. In this experiment, the third-generation ONT sequencing was used to sequence the full-length transcriptome of testicular tissue, and 40,038 new transcripts were obtained, and the proportion was almost close to the number of known transcripts identified. A total of 7,645 fused transcripts, 15,355 ASs, 25,798 SSRs, and 35,503 lncRNAs were detected. Through gene co-expression network analysis, the key pathways and Hub genes in each stage of yak testicular development were confirmed. The effects of alternative splicing and splicing variation on mammalian spermatogenesis will provide new insights into the potential application of alternative splicing in the treatment of male infertility.
|
| |
|
| Overall design |
The full-length transcriptomes of four developmental stages of yak and adult cattle-yak testis were obtained by ONT sequencing technology,
|
| |
|
| Contributor(s) |
Wang X, Guo S, Pei J, Guo X |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Dec 28, 2023 |
| Last update date |
Apr 01, 2024 |
| Contact name |
shaoke guo |
| E-mail(s) |
82101205332@caas.cn
|
| Phone |
15036009308
|
| Organization name |
Chinese Academy of Agricultural Sciences
|
| Department |
Lanzhou institute of husbandry and pharmaceutical sciences
|
| Street address |
West Lake Street
|
| City |
Lanzhou |
| State/province |
Gansu |
| ZIP/Postal code |
730050 |
| Country |
China |
| |
|
| Platforms (2) |
| GPL34047 |
PromethION (Bos grunniens) |
| GPL34048 |
PromethION (Bos grunniens x Bos taurus) |
|
| Samples (15)
|
|
| Relations |
| BioProject |
PRJNA1058530 |
Less...
More...