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Series GSE250169 Query DataSets for GSE250169
Status Public on Jun 29, 2024
Title EPDR1 promotes PD-L1 expression and antitumor immune evasion by inhibiting TRIM21-dependent ubiquitylation if IKBKB.
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary While immune checkpoint blockade (ICB) has shown promise for clinical cancer therapy, its efficacy has only been observed in a limited subset of patients and the underlying mechanisms regulating innate and acquired resistance to ICB of tumor cells is poorly understood. Here, we identified EPDR1 as an important intrinsic tumor regulator of PD-L1 expression and the antitumor T-cell response that inhibits TRIM21-dependent ubiquitylation of IKBKB. Mechanistically, EPDR1 binds to TRIM21 and disrupts its interaction with IKBKB, which suppresses the ubiquitylation and autophagosome degradation of the IKBKB protein and thus enhances NF-κB-mediated transcriptional activation of PD-L1. We further confirmed through a mouse liver cancer model that EPDR1 mediates the exhaustion of CD8+ T cells and promotes tumor progression. In addition, we observed a positive correlation between EPDR1 and PD-L1 expression in both human and mouse liver cancer samples. Collectively, our study reveals an unappreciated role of EPDR1 in orchestrating tumor immune evasion and cancer progression, suggesting that targeting EPDR1-TRIM21 is a potential strategy for cancer immunotherapy.
 
Overall design To investigate the pathway that involved in the EPDR1 mediated regulation of PD-L1, we performed qRT‒PCR analyses on a series of immune-related molecules in HepG2 cells, HepG2 cells expressing NTC and shEPDR1 was collected and followed sequencing
 
Contributor(s) Qian X, Shen S
Citation(s) 39152265
Submission date Dec 14, 2023
Last update date Oct 15, 2024
Contact name Xiaoyu Qian
E-mail(s) xiaoyu8274687@outlook.com
Organization name South China University of Technology
Street address Guangzhou Panyu University City
City Guangzhou
State/province Guangzhou
ZIP/Postal code 510641
Country China
 
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (2)
GSM7974953 HepG2 cell, shNTC
GSM7974954 HepG2 cell, shEPDR1
Relations
BioProject PRJNA1052586

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Supplementary file Size Download File type/resource
GSE250169_RAW.tar 1.9 Mb (http)(custom) TAR (of FPKM_TRACKING)
SRA Run SelectorHelp
Raw data are available in SRA

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