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Series GSE248014 Query DataSets for GSE248014
Status Public on Jul 29, 2024
Title RNA sequensing data of a phase 2 clinical trial of pancreatic ductal adenocarcinoma treated with entinostat in combination with nivolumab
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary We conducted a single-center, open-label, Simon two-stage, phase II study of entinostat in combination with the PD1 inhibitor nivolumab in patients with advanced pancreatic ductal adenocarcinoma. Patients received oral entinostat 5 mg once a week. After a 14-day lead-in with entinostat monotherapy, patients concurrently receive entinostat 5 mg orally once a week plus nivolumab 240 mg intravenously until the time of progression or unacceptable toxicities.
 
Overall design All patients underwent fresh tumor biopsy (subsequent passes flash frozen, formalin-fixed paraffin-embedded, and preserved in RNAlater) at baseline, after two weeks of entinostat lead-in therapy (C1D1), and on week 6 following entinostat given with nivolumab combination therapy (C2D1).
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Authors state:
This is patient RNAseq data. Here we post only processed data and will submit raw files to dbGap
 
Contributor(s) Baretti M, Azad NS, Danilova L
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Nov 16, 2023
Last update date Jul 29, 2024
Contact name Ludmila Danilova
E-mail(s) ldanilo1@jhmi.edu
Phone 4432872907
Organization name Johns Hopkins School of Medicine
Street address 550 N Broadway St 1103E
City Baltimore
ZIP/Postal code 21205
Country USA
 
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (45)
GSM7904716 patient J1798_P28 at time point Baseline
GSM7904717 patient J1798_P41 at time point Baseline
GSM7904718 patient J1798_P41 at time point C1D1
Relations
BioProject PRJNA1041407

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE248014_table_RNAseq.csv.gz 1.4 Mb (ftp)(http) CSV
Raw data are available in SRA
Processed data are available on Series record

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