|
| Status |
Public on Oct 18, 2010 |
| Title |
Kc-Rubin + Ecdysone smallRNA RNA-Seq |
| Project |
modENCODE
|
| Organism |
Drosophila melanogaster |
| Experiment type |
Non-coding RNA profiling by high throughput sequencing
|
| Summary |
modENCODE_submission_2974
This submission comes from a modENCODE project of Eric Lai. For full list of modENCODE projects, see http://www.genome.gov/26524648
Project Goal: We plan to generate a comprehensive catalog of expressed and functional microRNAs, and generate biological evidence for their regulatory activity. We plan also to delineate the primary transcription units of microRNA genes. Finally, we plan to annotate other classes of non-miRNA expressed small RNAs, as least some of which may define novel classes of small RNA genes.
For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf
Keywords: RNA-seq
|
| |
|
| Overall design |
EXPERIMENT TYPE: RNA-seq. BIOLOGICAL SOURCE: Cell Line: Kc-Rubin; Tissue: embryo-derived cell-line; Developmental Stage: late embryonic stage; Genotype: se/e; Sex: Female; EXPERIMENTAL FACTORS: Cell Line Kc-Rubin
|
| Web link |
http://www.modencode.org
|
| |
|
| Contributor(s) |
Lai E |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| BioProject |
PRJNA168994 |
| |
| Submission date |
Oct 06, 2010 |
| Last update date |
May 15, 2019 |
| Contact name |
DCC modENCODE |
| E-mail(s) |
help@modencode.org
|
| Phone |
416-673-8579
|
| Organization name |
Ontario Institute for Cancer Research
|
| Lab |
modENCODE DCC
|
| Street address |
MaRS Centre, South Tower, 101 College Street, Suite 800
|
| City |
Toronto |
| State/province |
Ontario |
| ZIP/Postal code |
M5G 0A3 |
| Country |
Canada |
| |
|
| Platforms (1) |
| GPL9058 |
Illumina Genome Analyzer (Drosophila melanogaster) |
|
| Samples (2) |
| GSM609243 |
Lai_Kc_Rubin_Ecdysone extraction1_seq1 aliquote 1 |
| GSM609244 |
Lai_Kc_Rubin_Ecdysone extraction2_seq1 aliquote 1 |
|
| Relations |
| SRA |
SRP003818 |
