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Series GSE245355 Query DataSets for GSE245355
Status Public on Oct 18, 2023
Title Gene Expression and Chromatin Accessibility of Nephron Progenitor Cells in Mice
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary We report the use of high-throughput sequencing, including RNA-seq and ATAC-seq, to compare the gene expression patterns and chromatin accessibility in uninduced (mK3) and epithelial-differentiated (mK4) metanephric mesenchymal cells.
 
Overall design Examination of 2 different metanephric mesenchymal cells mK3 and mK4
 
Contributor(s) Lei L, Zhou Q, Xie Y
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Oct 13, 2023
Last update date Oct 18, 2023
Contact name Lei Li
E-mail(s) 2020320243@stu.cqmu.edu.cn
Organization name CQMU
Street address yixueyuan road
City Chongqing
ZIP/Postal code 400000
Country China
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (8)
GSM7841289 mK3 cells, dup #1
GSM7841290 mK3 cells, dup #2
GSM7841291 mK3 cells, dup #3
Relations
BioProject PRJNA1027873

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE245355_ExpressionProfile.txt.gz 747.4 Kb (ftp)(http) TXT
GSE245355_K3_bt.bw 304.9 Mb (ftp)(http) BW
GSE245355_K3_np_peaks.narrowPeak.gz 555.8 Kb (ftp)(http) NARROWPEAK
GSE245355_K4_np_peaks.narrowPeak.gz 864.2 Kb (ftp)(http) NARROWPEAK
GSE245355_k4_bt.bw 252.5 Mb (ftp)(http) BW
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Raw data are available in SRA
Processed data are available on Series record

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