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Series GSE244802 Query DataSets for GSE244802
Status Public on May 06, 2024
Title Csk restrains BCR-mediated ROS production and contributes to germinal center selection and affinity maturation
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Compared with naïve B cells, the B cell receptor (BCR) signal in germinal center (GC) B cells is attenuated; however, the significance of this signaling attenuation has not been well defined. Here, to investigate the role of attenuation of BCR signaling, we employed a Csk mutant mouse model in which Csk-deficiency in GC B cells resulted in augmentation of net BCR signaling with no apparent effect on antigen presentation. We found that Csk is required for GC maintenance and efficient antibody affinity maturation. Mechanistically, ROS-induced apoptosis was exacerbated concomitantly with mitochondrial dysfunction in Csk-deficient GC B cells. Hence, our data suggest that attenuation of the BCR signal restrains hyper-ROS production, thereby protecting GC B cells from apoptosis and contributing to efficient affinity maturation.
 
Overall design Germinal centers (GCs) are the primary site where B cells undergo affinity maturation, the process whereby the average affinity of antibodies increases with time after immunization. To investigate the role of B cell receptor signaling in GC B cell selection, we analyzed the transcriptome of Csk-deficient GC light zone B cells by RNA-seq. Samples consist of 3 Csk(+/+) and 2 Csk(f/f) biological replicates.
 
Contributor(s) Inoue T, Matsumoto Y, Kawai C, Ohara O
Citation(s) 38753246
BioProject PRJNA1023691
Submission date Oct 06, 2023
Last update date Aug 05, 2024
Contact name Takeshi Inoue
Organization name Osaka University
Street address 3-1 Yamadaoka
City Suita-shi
State/province Osaka
ZIP/Postal code 5650871
Country Japan
 
Platforms (1)
GPL18480 Illumina HiSeq 1500 (Mus musculus)
Samples (5)
GSM7829904 Csk(+/+) #1
GSM7829905 Csk(+/+) #2
GSM7829906 Csk(+/+) #3

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Supplementary file Size Download File type/resource
GSE244802_Csk_RNA-seq.txt.gz 361.0 Kb (ftp)(http) TXT
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Raw data are available in SRA

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