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Series GSE244478 Query DataSets for GSE244478
Status Public on Oct 09, 2023
Title Association between Altered Tryptophan Metabolism, Plasma Aryl Hydrocarbon Receptor Agonists, and Inflammatory Chagas Disease
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Chagas disease causes a cardiac illness characterized by immunoinflammatory reactions leading to myocardial fibrosis and remodeling. The development of Chronic Chagas Cardiomyopathy (CCC) in some patients while others remain asymptomatic is not fully understood, but dysregulated inflammatory responses are implicated. The Aryl hydrocarbon receptor (AhR) plays a crucial role in regulating inflammation. Certain tryptophan (Trp) metabolites have been identified as AhR ligands with regulatory functions. We investigated AhR expression, agonist response, ligand production, and AhR-dependent responses, such as IDO activation and regulatory T (Treg) cells induction, in two T.cruzi-infected mouse strains (B6 and Balb/c) showing different polymorphisms in AhR. Furthermore, we assessed the metabolic profile of Trp catabolites and AhR agonistic activity levels in plasma samples from patients with chronic Chagas disease (CCD) and healthy donors (HD) using a luciferase reporter assay and liquid chromatography-mass spectrophotometry (LC-MS) analysis. T. cruzi-infected B6 mice showed impaired AhR-dependent responses compared to Balb/c mice, including reduced IDO activity, kynurenine levels, Treg cell induction, CYP1A1 up-regulation, and AhR expression following agonist activation. Additionally, B6 mice exhibited no detectable 34 AhR agonist activity in plasma and displayed lower CYP1A1 up-regulation and AhR expression upon agonist activation. Similarly, CCC patients had decreased AhR agonistic activity in plasma compared to HD patients and exhibited dysregulation in Trp metabolic pathways, resulting in altered plasma metabolite profiles. Notably, patients with severe CCC specifically showed increased N-acetylserotonin levels in their plasma. The methods and findings presented here contribute to a better understanding of CCC development mechanisms and may identify potential specific biomarkers for T. cruzi infection and the severity of associated heart disease. These insights could be valuable in designing new therapeutic strategies. Ultimately, this research aims to establish the AhR agonistic activity and Trp metabolic profile in plasma as an innovative, non-invasive predictor of prognosis for chronic Chagas disease.
 
Overall design Bone marrow macrophages (BMDM) from C57BL/6 mice were cultured for 24h with Trypanosoma cruzi (Tulahuen Strain, TcVI). Cell to parasite ratio was set to 1:3. Total RNA was harvested according to the Qiagen RNeasy Mini Kit protocol. Only Samples that passed the purity cutoff (Abs 260/Abs 280 = 1,7-2) were selected for downstream processing. Libraries were processed by the Broad Institute's Broad Technology Labs and the Broad Genomics Platform.
Expression profiling analysis by bulk-RNAseq was carried out across 2 experimental groups, each consisting of four replicates: Ctrl (non-infected BMDM) and Tc-infected BMDM.
Web link https://pubmed.ncbi.nlm.nih.gov/38283348/
 
Contributor(s) Ambrosio LF, Volpini X, Motran CC, Quiroz JN
Citation(s) 38283348
Submission date Oct 02, 2023
Last update date Jan 29, 2024
Contact name JUAN NAHUEL QUIROZ
E-mail(s) juan.quiroz@mi.unc.edu.ar
Phone 03425204339
Organization name CIBICI
Department CLINICAL BIOCHEMISTRY
Lab INNATE IMMUNITY
Street address HAYA DE LA TORRE Y MEDINA ALLENDE S/N
City CORDOBA
State/province CORDOBA
ZIP/Postal code 5000
Country Argentina
 
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (8)
GSM7817749 Non-infected BMDM, Rep1
GSM7817750 Non-infected BMDM, Rep2
GSM7817751 Non-infected BMDM, Rep3
Relations
BioProject PRJNA1023247

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE244478_Ambrosio_normalized_counts.tsv.gz 388.4 Kb (ftp)(http) TSV
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Raw data are available in SRA

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