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Series GSE244230 Query DataSets for GSE244230
Status Public on Sep 27, 2024
Title Transcriptome analysis of lung neutrophils from mice infected with Mycobacterium tuberculosis
Organism Mus
Experiment type Expression profiling by high throughput sequencing
Summary Neutrophils are accumulated in mouse lungs following Mycobacterium tuberculosis infections. Increased influx of neutrophils is associated with increased susceptibility to disease, but the underlying mechanisms of neutrophil mediated Tuberculosis disease pathogenesis is poorly understood. To understand the transcriptomic differences between resistant (C57 BL/6) and susceptible (C3HeB/FeJ) mouse lung neutrophils, we sorted them at Day 29 post infection and analyzed them by bulk mRNA sequencing.
 
Overall design Bulk mRNA sequencing to study transcriptomic differences in neutrophils at Day 29 post infection with Mycobacterium tuberculosis HN878 from C57 BL/6 and C3HeB/FeJ mouse lungs.
 
Contributor(s) Sankar P, Mishra B, Bossardi Ramos R
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Submission date Sep 28, 2023
Last update date Sep 27, 2024
Contact name Ramon Bossardi Ramos
E-mail(s) bossarr@amc.edu
Organization name Albany Medical College
Department Department of Molecular and Cellular Physiology
Lab Adam's Lab
Street address 43 New Scotland Avenue
City Albany
State/province Ny
ZIP/Postal code 12208
Country USA
 
Platforms (1)
GPL23642 Illumina NextSeq 500 (Mus)
Samples (6)
GSM7809114 RESUB-B1
GSM7809115 RESUB-B2
GSM7809116 RESUB-B3
Relations
BioProject PRJNA1021944

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE244230_counts_per_sample.csv.gz 524.6 Kb (ftp)(http) CSV
GSE244230_normalized_counts.csv.gz 738.4 Kb (ftp)(http) CSV
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Raw data are available in SRA

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