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Series GSE243762 Query DataSets for GSE243762
Status Public on Aug 19, 2024
Title Dietary folate and cofactors accelerate age-dependent p16 epimutation to promote intestinal tumorigenesis
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary We use a mouse model of age-dependent p16 epimutation, in which the p16 gene activity is directly controlled by promoter DNA methylation. We show p16 epimutation is modulated by folate and cofactors in dietary supplementation, which leads to increased colon cancer risk. Importantly, our findings provide functional evidence concerning the safety of folate fortification in the general population.
 
Overall design As a control, we analyzed cells from adjacent normal colonic mucosa.
 
Contributor(s) Yang L, Shen L
Citation(s) 38259096
Submission date Sep 21, 2023
Last update date Aug 20, 2024
Contact name Lanlan Shen
E-mail(s) lanlanshenlab@gmail.com
Organization name Baylor College of Medicine
Department Pediatrics
Lab Shen
Street address 1100 Bates Ave
City Houston
State/province Texas
ZIP/Postal code 77030
Country USA
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (13)
GSM7795467 replicate_1_AP1086_Adj
GSM7795468 replicate_2_AP1044_Adj
GSM7795469 replicate_3_AP1067_Adj
Relations
BioProject PRJNA1019771

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE243762_RAW.tar 882.9 Mb (http)(custom) TAR (of MTX, TSV)
SRA Run SelectorHelp
Raw data are available in SRA

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