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Series GSE242130 Query DataSets for GSE242130
Status Public on Sep 01, 2024
Title Gene expression profiling of CD8+ T cells in the Norathyriol versus PBS-treated co-culture system
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Metabolic reprogramming fuels cancer cell metastasis and remodels the immunosuppressive tumor microenvironment (TME). We report here that a circRNA, circPETH, packaged by extracellular vesicles (EVs) from tumor-associated macrophages (TAMs) to hepatocellular carcinoma (HCC) cells, facilitates glycolysis and metastasis of recipient HCC cells. Mechanistically, circPETH-147aa, encoded by circPETH in a m6A-driven manner, promotes PKM2-catalyzed ALDOA-S36 phosphorylation via MEG pocket. Furthermore, circPETH-147aa impairs anti-HCC immunity by elevating HuR-dependent SLC43A2 mRNA stability and driving methionine and leucine deficiency in cytotoxic CD8+ T cells. Importantly, by virtual and experimental screening, we found that the novel small-molecule Norathyriol was an effective inhibitor that targets the MEG pocket on circPETH-147aa surface. Norathyriol reverses circPETH-147aa-facilitated acquisition of metabolic and metastatic phenotypes for HCC cells, increases anti-PD1 efficacy and boosts cytotoxic CD8+ T-cell function. Our findings determine Norathyriol as a promising anti-HCC agent that contributes to the attenuation of advanced HCC resistance to immune checkpoint blocker (ICB) therapies.
 
Overall design To understand the mechanistic association of Norathyriol with CD8+ T cells, RNA-seq was performed to compare the expression profiles of CD8+ T cells in the Norathyriol versus PBS-treated co-culture system.
 
Contributor(s) Lan T, Gao F, Cai Y
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Submission date Sep 01, 2023
Last update date Sep 01, 2024
Contact name Tian Lan
E-mail(s) blue_sky_land@163.com
Organization name West China Hospital
Department Department of Liver Surgery & Liver Transplantation
Lab Laboratory of Liver Surgery
Street address No. 37 of Guoxue Lane
City Chengdu
State/province Sichuan
ZIP/Postal code 610041
Country China
 
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (4)
GSM7749504 CD8T_Norathyriol_rep1
GSM7749505 CD8T_Norathyriol_rep2
GSM7749506 CD8T_PBS_rep1
Relations
BioProject PRJNA1011824

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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE242130_T_NoraVST_PBS_Gene_expression.txt.gz 457.7 Kb (ftp)(http) TXT
GSE242130_raw_counts.txt.gz 4.6 Mb (ftp)(http) TXT
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Processed data are available on Series record

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