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| Status |
Public on May 31, 2024 |
| Title |
RNA-sequencing of matched samples from rhabdomyosarcoma samples, obtained before therapy and mid-treatment resection |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Eighteen samples were obtained from 9 patients who underwent delayed resection. The purpose of this study is to identify transcriptomic shifts in samples during therapy.
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| |
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| Overall design |
Scrolls from formalin-fixed paraffin-embedded blocks underwent automated RNA extraction using the Maxwell RSC RNA extraction kit. RNA-seq libraries were then generated using the Takara SMARTer Stranded Total RNA-seq Kit v2 – pico input. Libraries then underwent sequencing on an Illumina NovaSeq sequencer.
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| |
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| Contributor(s) |
Patel A, Dyer M |
| Citation(s) |
39060228 |
| |
| Submission date |
Aug 07, 2023 |
| Last update date |
Aug 30, 2024 |
| Contact name |
Michael Dyer |
| Organization name |
St. Jude Children's Research Hospital
|
| Department |
Developmental Neurobiology
|
| Street address |
262 Danny Thomas Pl MS 324
|
| City |
Memphis |
| State/province |
TN |
| ZIP/Postal code |
38105 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
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| Samples (18)
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| Relations |
| BioProject |
PRJNA1003092 |
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