|
| Status |
Public on Jan 18, 2013 |
| Title |
CMV 2b immunoprecipitated small RNAs data set |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Non-coding RNA profiling by high throughput sequencing
|
| Summary |
We report that CMV2b exist in a complex of sRNAs in arabidopsis, with significant preference to repeat-associated AGO4-related 24nt siRNAs. This differential selection of siRNAs in vivo helps CMV 2b to perturb host epigenetic defense in the form of transposons activation and severeal repeat associated loci hypomethylation.
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| |
|
| Overall design |
Examination of CMV 2b presence in sRNAs complex in vivo
|
| |
|
| Contributor(s) |
Hamera S, Jun W |
| Citation(s) |
21880078 |
| |
| Submission date |
Aug 24, 2010 |
| Last update date |
Aug 10, 2016 |
| Contact name |
sadia hamera |
| E-mail(s) |
sadiahumaira@yahoo.com
|
| Organization name |
chinese academy of sciences
|
| Street address |
state key lab of plant genomics
|
| City |
beijing |
| ZIP/Postal code |
100101 |
| Country |
China |
| |
|
| Platforms (1) |
| GPL9062 |
Illumina Genome Analyzer (Arabidopsis thaliana) |
|
| Samples (1) |
| GSM591260 |
CMV 2b IPed sRNA from Arabidopsis floral part |
|
| Relations |
| BioProject |
PRJNA130833 |
