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Series GSE237369

Query DataSets for GSE237369

Status

Public on Jul 24, 2023

Title

intact Hi-C from naive thymus-derived CD4-positive, alpha-beta T cell (ENCSR215PTV)

Project

ENCODE

Organism

Homo sapiens

Experiment type

Other

Summary

naive CD4+ T cell Th0 effector resting intact mnase

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf

Overall design

https://www.encodeproject.org/ENCSR215PTV/

Citation(s)

22955616

BioProject

PRJNA30709

Submission date

Jul 14, 2023

Last update date

Jul 26, 2023

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platforms (1)

GPL30173

NextSeq 2000 (Homo sapiens)

Samples (2)

GSM7610485	intact Hi-C from naive thymus-derived CD4-positive, alpha-beta T cell (ENCLB302LBG)
GSM7610486	intact Hi-C from naive thymus-derived CD4-positive, alpha-beta T cell (ENCLB957OTG)

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML
Series Matrix File(s)	TXT

Supplementary file	Size	Download	File type/resource
GSE237369_ENCFF103MQU_nuclease_cleavage_frequency_GRCh38.bigWig	7.9 Gb	(ftp)(http)	BIGWIG
GSE237369_ENCFF182ATF_pairs_GRCh38.pairs.gz	16.4 Gb	(ftp)(http)	PAIRS
GSE237369_ENCFF520GFL_mapping_quality_thresholded_contact_matrix_GRCh38.hic.gz	52.0 Gb	(ftp)(http)	HIC
GSE237369_ENCFF701YHF_contact_domains_GRCh38.bedpe.gz	154.2 Kb	(ftp)(http)	BEDPE
GSE237369_ENCFF971TUI_loops_GRCh38.bedpe.gz	5.2 Mb	(ftp)(http)	BEDPE
GSE237369_RAW.tar	10.0 Kb	(http)(custom)	TAR (of TXT)
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record