GEO Accession viewer

NCBI > GEO > Accession Display

Not logged in | Login

GEO help: Mouse over screen elements for information.

Series GSE237362

Query DataSets for GSE237362

Status

Public on Jul 24, 2023

Title

intact Hi-C from activated CD4-positive, alpha-beta T cell (ENCSR421CGL)

Project

ENCODE

Organism

Homo sapiens

Experiment type

Other

Summary

LP6 CD4+ T Cells activated intact Hi-C

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf

Overall design

https://www.encodeproject.org/ENCSR421CGL/

Citation(s)

22955616

BioProject

PRJNA30709

Submission date

Jul 14, 2023

Last update date

Jul 26, 2023

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platforms (1)

GPL30173

NextSeq 2000 (Homo sapiens)

Samples (4)

More...

GSM7610440	intact Hi-C from activated CD4-positive, alpha-beta T cell (ENCLB541PRC)
GSM7610441	intact Hi-C from activated CD4-positive, alpha-beta T cell (ENCLB050GOB)
GSM7610442	intact Hi-C from activated CD4-positive, alpha-beta T cell (ENCLB978ZBF)

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML
Series Matrix File(s)	TXT

Supplementary file	Size	Download	File type/resource
GSE237362_ENCFF006TZN_nuclease_cleavage_frequency_GRCh38.bigWig	7.1 Gb	(ftp)(http)	BIGWIG
GSE237362_ENCFF046SUN_haplotype-specific_nuclease_cleavage_frequency_GRCh38.bigWig	407.7 Mb	(ftp)(http)	BIGWIG
GSE237362_ENCFF155BJD_haplotype-specific_contact_matrix_GRCh38.hic.gz	3.2 Gb	(ftp)(http)	HIC
GSE237362_ENCFF169GRO_haplotype-specific_nuclease_cleavage_corrected_frequency_GRCh38.bigWig	406.5 Mb	(ftp)(http)	BIGWIG
GSE237362_ENCFF172GSG_haplotype-specific_contact_matrix_GRCh38.hic.gz	3.2 Gb	(ftp)(http)	HIC
GSE237362_ENCFF329RIY_loops_GRCh38.bedpe.gz	3.1 Mb	(ftp)(http)	BEDPE
GSE237362_ENCFF447UZD_contact_matrix_GRCh38.hic.gz	41.8 Gb	(ftp)(http)	HIC
GSE237362_ENCFF494OCH_haplotype-specific_nuclease_cleavage_frequency_GRCh38.bigWig	860.9 Mb	(ftp)(http)	BIGWIG
GSE237362_ENCFF533AIR_haplotype-specific_nuclease_cleavage_frequency_GRCh38.bigWig	863.1 Mb	(ftp)(http)	BIGWIG
GSE237362_ENCFF680PMT_contact_domains_GRCh38.bedpe.gz	202.6 Kb	(ftp)(http)	BEDPE
GSE237362_ENCFF809XPD_pairs_GRCh38.pairs.gz	12.8 Gb	(ftp)(http)	PAIRS
GSE237362_ENCFF962EDB_mapping_quality_thresholded_contact_matrix_GRCh38.hic.gz	39.0 Gb	(ftp)(http)	HIC
GSE237362_RAW.tar	10.0 Kb	(http)(custom)	TAR (of TXT)
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record