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Series GSE237349

Query DataSets for GSE237349

Status

Public on Jul 25, 2023

Title

intact Hi-C from mucosa of descending colon (ENCSR206OUF)

Project

ENCODE

Organism

Homo sapiens

Experiment type

Other

Summary

w80-mucosa-of-descending-colon-intact dnase HiC

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf

Overall design

https://www.encodeproject.org/ENCSR206OUF/

Citation(s)

22955616

BioProject

PRJNA30709

Submission date

Jul 14, 2023

Last update date

Jul 26, 2023

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platforms (1)

GPL30173

NextSeq 2000 (Homo sapiens)

Samples (2)

GSM7610368	intact Hi-C from mucosa of descending colon (ENCLB010FFQ)
GSM7610369	intact Hi-C from mucosa of descending colon (ENCLB383USQ)

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML
Series Matrix File(s)	TXT

Supplementary file	Size	Download	File type/resource
GSE237349_ENCFF089QOF_nuclease_cleavage_frequency_GRCh38.bigWig	7.6 Gb	(ftp)(http)	BIGWIG
GSE237349_ENCFF309UNV_mapping_quality_thresholded_contact_matrix_GRCh38.hic.gz	47.2 Gb	(ftp)(http)	HIC
GSE237349_ENCFF336LSI_contact_matrix_GRCh38.hic.gz	52.0 Gb	(ftp)(http)	HIC
GSE237349_ENCFF392AHD_contact_domains_GRCh38.bedpe.gz	160.6 Kb	(ftp)(http)	BEDPE
GSE237349_ENCFF601CND_loops_GRCh38.bedpe.gz	298.1 Kb	(ftp)(http)	BEDPE
GSE237349_ENCFF953VVS_pairs_GRCh38.pairs.gz	14.1 Gb	(ftp)(http)	PAIRS
GSE237349_RAW.tar	10.0 Kb	(http)(custom)	TAR (of TXT)
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record