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Series GSE236988 Query DataSets for GSE236988
Status Public on Jul 16, 2023
Title RNA-seq analysis of Lrig1+ and Lrig1- CD4+ T cells in mouse spleen
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Regulatory T cell (Treg) is the immune-suppressive T cell subset and the crucial component for preventing autoimmunity. The molecules defining the suppressive population of T cells phenotypically and functionally remain to be discovered.
In this study, we report that Lrig1 is highly expressed in suppressive CD4+ T cell populations. We performed RNA-seq analysis of CD4+Lrig1+ and CD4+Lrig1- T cells from mouse splenocytes to analyze the genes involeved in the suppressive function of T cells.
 
Overall design To investigate the transcriptional difference between Lrig1+ and Lrig1- CD4+ T cells, we isolated Lrig1+ and Lrig1- CD4+ T cells from spleen of 7 weeks of age female C57BL/6 mice using flow cytometry.
 
Contributor(s) Lee S, Moon J, Ho C, Lee S
Citation(s) 37666819
Submission date Jul 10, 2023
Last update date Sep 15, 2023
Contact name Chun-Chang Ho
E-mail(s) gnwnsckd93@naver.com
Organization name Good T cells.,Inc.
Street address 189 Seongam-ro
City Seoul
ZIP/Postal code 03929
Country South Korea
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (6)
GSM7592707 Mouse splenic Lrig1-CD4+ T cells, rep1
GSM7592708 Mouse splenic Lrig1-CD4+ T cells, rep2
GSM7592709 Mouse splenic Lrig1-CD4+ T cells, rep3
Relations
BioProject PRJNA993251

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE236988_raw_count_FPKM_1.txt.gz 4.5 Mb (ftp)(http) TXT
GSE236988_raw_count_FPKM_2.txt.gz 4.3 Mb (ftp)(http) TXT
GSE236988_raw_count_FPKM_3.txt.gz 4.4 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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