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Series GSE236601 Query DataSets for GSE236601
Status Public on Nov 01, 2023
Title Pre-existing interferon gamma conditions the lung to mediate early control of SARS-CoV-2
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Interferons (IFNs) are critical for anti-viral host defence. Type-1 and type-3 IFNs are typically associated with early control of viral replication and promotion of inflammatory immune responses; however, less is known about the role of IFNγ in anti-viral immunity, particularly in the context of SARS-CoV-2. We have previously observed that lung infection with attenuated bacteria M. bovis BCG achieved though intravenous (iv) administration provides strong protection against SARS-CoV-2 (SCV2) infection and disease in two mouse models. Assessment of the pulmonary cytokine milieu revealed that iv BCG induces a robust IFNγ response and low levels of IFNβ. Here we examined the role of ongoing IFNγ responses due to concurrent bacterial infection on SCV2 disease outcomes in two murine models. We report that IFNγ is required for iv BCG induced reduction in pulmonary viral loads and that this outcome is dependent on IFNγ receptor expression by non-hematopoietic cells. Further analysis revealed that BCG infection promotes the upregulation of ISGs with reported anti-viral activity by pneumocytes and bronchial epithelial cells in an IFNγ dependent manner, suggesting a possible mechanism for the observed protection. Finally, we confirmed the importance of IFNγ in these anti-viral effects by demonstrating that the recombinant cytokine itself provides strong protection against SCV2 challenge when administered intranasally. Together, our data show that a pre-established IFNγ response within the lung is protective against SCV2 infection, suggesting that concurrent or recent infections that drive IFNγ may limit the pathogenesis of this virus and supporting possible prophylactic uses of this cytokine in COVID-19 management.
 
Overall design PBS iv, BCG iv inoculated mice as well as each group administred anti-IFNγ were infected with SARS-CoV-2 via the intra-nasal route. Lungs were harvested from the mice 3 days post infection and single cell suspenions were generated for scRNAseq analysis
 
Citation(s) 38086794
Submission date Jul 05, 2023
Last update date Jan 02, 2024
Contact name Sivaranjani Namasivayam
E-mail(s) sivaranjani.namasivayam@nih.gov
Organization name NIH
Department NIAID
Street address 33 North Drive
City Bethesda
ZIP/Postal code 20892
Country USA
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (4)
GSM7561691 PBSiv
GSM7561692 BCGiv
GSM7561693 PBSiv_aIFNg
Relations
BioProject PRJNA991639

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Supplementary file Size Download File type/resource
GSE236601_RAW.tar 164.3 Mb (http)(custom) TAR (of MTX, TSV)
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Raw data are available in SRA
Processed data provided as supplementary file

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