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| Status |
Public on Sep 11, 2023 |
| Title |
Dynamic enhancer landscapes in human craniofacial development |
| Organisms |
Homo sapiens; Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation(s) |
38448444 |
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| Submission date |
Jun 26, 2023 |
| Last update date |
Mar 07, 2024 |
| Contact name |
Laura E Cook |
| E-mail(s) |
lecook@lbl.gov
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| Organization name |
Lawrence Berkeley National Laboratory
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| Department |
Biosciences
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| Lab |
MFGL
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| Street address |
1 Cyclotron Road
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| City |
Berkeley |
| State/province |
California |
| ZIP/Postal code |
94720 |
| Country |
USA |
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| Platforms (3) |
| GPL16791 |
Illumina HiSeq 2500 (Homo sapiens) |
| GPL17021 |
Illumina HiSeq 2500 (Mus musculus) |
| GPL21103 |
Illumina HiSeq 4000 (Mus musculus) |
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| Samples (67)
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| GSM7508789 |
CS22, face, ATAC, rep 1 |
| GSM7508790 |
CS23, face, ATAC, rep 1 |
| GSM7508791 |
CS18, face, H3K27ac, rep 1 |
| GSM7508792 |
CS18, face, H3K27ac, rep 2 |
| GSM7508793 |
CS18, face, H3K27ac, rep 3 |
| GSM7508794 |
CS19, face, H3K27ac, rep 1 |
| GSM7508795 |
CS22, face, H3K27ac, rep 1 |
| GSM7508796 |
CS22, face, H3K27ac, rep 2 |
| GSM7508797 |
CS23, face, H3K27ac, rep 1 |
| GSM7508798 |
CS18, face, rep 3 |
| GSM7508799 |
CS18, face, rep 4 |
| GSM7508800 |
CS19, face, rep 1 |
| GSM7508801 |
CS22, face, rep 2 |
| GSM7508802 |
CS22, face, rep 3 |
| GSM7508803 |
CS22, face, rep 4 |
| GSM7508804 |
CS22, face, rep 5 |
| GSM7508805 |
CS23, face, rep 1 |
| GSM7508806 |
CS23, face, rep 3 |
| GSM7508807 |
CS23, face, rep 4 |
| GSM7508808 |
Maxillary Process (Mx), rep1 |
| GSM7508809 |
Maxillary Process (Mx), rep2 |
| GSM7508810 |
Mandibular Process (Md), rep1 |
| GSM7508811 |
Mandibular Process (Md), rep2 |
| GSM7508812 |
Nose, rep1 |
| GSM7508813 |
Nose, rep2 |
| GSM7508814 |
mandibular process, e15.5, H3K27ac |
| GSM7508815 |
maxillary process, e15.5, H3K27ac |
| GSM7508816 |
nose, e15.5, H3K27ac |
| GSM7508817 |
mandibular process, e15.5, input |
| GSM7508818 |
maxillary process, e15.5, input |
| GSM7508819 |
nose, e15.5, H3K27 input |
| GSM7508820 |
mandibular process, e11.5, H3K27ac |
| GSM7508821 |
maxillary process, e11.5, H3K27ac |
| GSM7508822 |
medial nasal plate, e11.5, H3K27ac |
| GSM7508823 |
lateral nasal plate, e11.5, H3K27ac |
| GSM7508824 |
mandibular process, e11.5, input |
| GSM7508825 |
maxillary process, e11.5, input |
| GSM7508826 |
medial nasal plate, e11.5, input |
| GSM7508827 |
lateral nasal plate, e11.5, input |
| GSM7508828 |
mandibular process, e13.5, H3K27ac |
| GSM7508829 |
maxillary process, e13.5, H3K27ac |
| GSM7508830 |
nose, e13.5, H3K27ac |
| GSM7508831 |
mandibular process, e13.5, input |
| GSM7508832 |
maxillary process, e13.5, input |
| GSM7508833 |
nose, e13.5, input |
| GSM7508871 |
face_hs746_hs1431_e12.5 |
| GSM7508872 |
face_hs746_hs1431_hs521_e13.5 |
| GSM7508873 |
face_hs521_e11.5 |
| GSM7508874 |
face_hs1431_e11.5_rep1 |
| GSM7508875 |
face_hs1431_e11.5_rep2 |
| GSM7508876 |
face_WT_e11.5 |
| GSM7508877 |
face_WT_e12.5 |
| GSM7508878 |
face_hs746_e11.5_rep1 |
| GSM7508879 |
face_hs746_e11.5_rep2 |
| GSM7508900 |
Mouse_Face_E10_5_rep1-003 |
| GSM7508901 |
Mouse_Face_E11_5_rep1 |
| GSM7508902 |
Mouse_Face_E12_5_rep1 |
| GSM7508903 |
Mouse_Face_E13_5_rep1-001 |
| GSM7508904 |
Mouse_Face_E14_5_rep1 |
| GSM7508905 |
Mouse_Face_E15_5_rep1 |
| GSM7510812 |
lateral nasal process, e11.5 |
| GSM7510813 |
medial nasal process, e11.5 |
| GSM7510814 |
maxillary process, e11.5 |
| GSM7510815 |
mandibular process, e11.5 |
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| This SuperSeries is composed of the following SubSeries:
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| GSE235744 |
Dynamic enhancer landscapes in human craniofacial development [human ATAC-seq] |
| GSE235745 |
Dynamic enhancer landscapes in human craniofacial development [human ChIP] |
| GSE235746 |
Dynamic enhancer landscapes in human craniofacial development [human RNA] |
| GSE235747 |
Dynamic enhancer landscapes in human craniofacial development [mouse ATAC] |
| GSE235748 |
Dynamic enhancer landscapes in human craniofacial development [mouse ChIP] |
| GSE235752 |
Dynamic enhancer landscapes in human craniofacial development [mouse RNA] |
| GSE235753 |
Dynamic enhancer landscapes in human craniofacial development [scRNA-seq] |
| GSE235756 |
Dynamic enhancer landscapes in human craniofacial development [scATAC-seq] |
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| Relations |
| BioProject |
PRJNA987710 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE235858_RAW.tar |
15.3 Gb |
(http)(custom) |
TAR (of BROADPEAK, BW, NARROWPEAK, RESULTS, SNAP, TXT) |
SRA Run Selector |
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