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Series GSE235669 Query DataSets for GSE235669
Status Public on Oct 27, 2023
Title Fungal metabolism and free amino acid content may predict nitrogen transfer to the host plant in the ectomycorrhizal relationship between Pisolithus spp. and Eucalyptus grandis
Organisms Eucalyptus grandis; Pisolithus microcarpus
Experiment type Expression profiling by high throughput sequencing
Summary Ectomycorrhizal (ECM) fungi are crucial for tree nitrogen (N) nutrition, however, mechanisms governing N transfer from fungal tissues to the host plant are not well understood. ECM fungal isolates, even from the same species, vary considerably in their ability to support tree N nutrition resulting in a range of often unpredictable symbiotic outcomes. In this study, we used isotopic labelling to quantify the transfer of N to the plant host by isolates from the ECM genus Pisolithus known to have significant variability in colonisation and transfer of nutrients to a host. We considered the metabolic fate of N acquired by the fungi and found that the percentage of plant N acquired through symbiosis significantly correlated to the concentration of free amino acids present in the ECM extra-radical mycelium. Transcriptomic analyses complemented these findings with isolates having high amino acid content and N transfer showing increased expression of genes in amino acid transport and catabolic pathways. These results suggest that fungal N metabolism drives transfer to the host plant in this interaction and that relative N transfer may be possible to predict through basic biochemical analyses.
 
Overall design In total 43 samples were analysed by RNA-sequencing of which 22 samples included 3-4 biological replicates each of 1 timepoint of symbiosis between Eucalyptus grandis and Pisolithus microcarpus (2 week post contact). The remaining samples included biological replicates of six genotypes of P. microcarpus grown axenically as a control and three biological replicates of axenically grown E. grandis. All organisms and symbiotic compartment was performed on ½ strength Modified Melin Norkans Medium (with 0.1g/L of glucose).
Web link https://nph.onlinelibrary.wiley.com/doi/10.1111/nph.19400
 
Contributor(s) Plett JM, Plett KL, Anderson IC
Citation(s) 37974494
Submission date Jun 23, 2023
Last update date Jan 29, 2024
Contact name Jonathan Michael Plett
E-mail(s) j.plett@westernsydney.edu.au
Organization name Western Sydney University
Department Hawkesbury Institute for the Environment
Street address Bourke St. Entrance, Building L9
City Richmond
State/province NSW
ZIP/Postal code 2753
Country Australia
 
Platforms (3)
GPL33522 Illumina NovaSeq 6000 (Pisolithus microcarpus)
GPL33523 Illumina NovaSeq 6000 (Eucalyptus grandis; Pisolithus microcarpus)
GPL33524 Illumina NovaSeq 6000 (Eucalyptus grandis)
Samples (43)
GSM7507242 MH615 flm 1-1
GSM7507243 MH615 flm 1-2
GSM7507244 MH615 flm 1-3
Relations
BioProject PRJNA986873

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE235669_Plett_et_al_Amino_Acid_Util_Fungal_Read_Counts.txt.gz 712.8 Kb (ftp)(http) TXT
GSE235669_Plett_et_al_Amino_Acid_Util_Plant_Read_Counts.txt.gz 896.8 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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