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Series GSE235144 Query DataSets for GSE235144
Status Public on Jul 15, 2023
Title Ezh2 promotes mammary tumor initiation through epigenetic regulation of the Wnt and mTORC1 signaling pathways (ChIP-Seq)
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary The regulation of gene expression through histone post-translational modifications plays a crucial role in breast cancer progression. However, the molecular mechanisms underlying the contribution of histone modification to tumor initiation remain unclear. To gain a deeper understanding of the role of the histone modifier Enhancer of Zeste homology 2 (Ezh2) in the early stages of mammary tumor progression, we employed an inducible mammary organoid system bearing conditional Ezh2 alleles that faithfully recapitulates key events of Luminal B breast cancer initiation. We showed that the loss of Ezh2 severely impairs oncogene-induced organoid growth, with Ezh2-deficient organoids maintaining a polarized epithelial phenotype. Transcriptomic profiling showed that Ezh2-deficient mammary epithelial cells upregulated the expression of negative regulators of Wnt signaling and downregulated genes involved in mTORC1 (mechanistic target of rapamycin complex 1) signaling. We identified Sfrp1, a Wnt signaling suppressor, as an Ezh2 target gene that is de-repressed and expressed in Ezh2-deficient epithelium. Furthermore, an analysis of breast cancer data revealed that Sfrp1 expression was associated with favorable clinical outcomes in Luminal B breast cancer patients. Finally, we confirmed that targeting Ezh2 impairs mTORC1 activity through an indirect mechanism that upregulates the expression of the tumour suppressor Pten. These findings indicate that Ezh2 integrates the mTORC1 and Wnt signaling pathways during early mammary tumor progression, arguing that inhibiting Ezh2 or therapeutically targeting Ezh2-dependent programs could be beneficial for the treatment of early-stage Luminal B breast cancer.
 
Overall design MIC/EZH2wt/wt organoids derived from mouse mammary epithelial cells were grown in culture medium for 6 days followed by 8 days of doxycycline treatment. ChIP sequencing with H3K27me3 antibody was performed.
 
Contributor(s) Liu L, Pacis A
Citation(s) 37549258
Submission date Jun 16, 2023
Last update date Oct 13, 2023
Contact name William Muller
E-mail(s) william.muller@mcgill.ca
Organization name McGill University
Department Biochemistry
Lab GCRC 507
Street address 1160 Av des Pins O
City Montreal
State/province Quebec
ZIP/Postal code H3A 1A3
Country Canada
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (4)
GSM7495930 DOX1_IP
GSM7495931 DOX2_IP
GSM7495932 Input1_D
This SubSeries is part of SuperSeries:
GSE235147 Ezh2 promotes mammary tumor initiation through the epigenetic regulation of the Wnt and mTORC1 signaling pathways
Relations
BioProject PRJNA984669

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Supplementary file Size Download File type/resource
GSE235144_RAW.tar 568.6 Mb (http)(custom) TAR (of BW)
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Raw data are available in SRA
Processed data provided as supplementary file

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