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Series GSE234188 Query DataSets for GSE234188
Status Public on Dec 20, 2023
Title Gene expression profile at single cell level of murine B cells from different compartments of naive young adult mice
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary In the context of understanding thymic T cell selection facilitated by local B cells, we sought to compare thymic B cells with their counterparts from other compartments in naive young adult mice.
Overall design B cells from spleen, inguinal lymph nodes, bone marrow, thymus and blood (each pooled from two mice) were isolated by fluorescence-activated cell sorting (FACS) and analyzed using scRNAseq (10x).
Contributor(s) Korn T, Afzali A, Nirschl L, Sie C
Citation(s) 38383779
Submission date Jun 05, 2023
Last update date Feb 22, 2024
Contact name Thomas Korn
Organization name Technical University of Munich
Department Experimental Neuroimmunology
Street address Ismaninger Str. 22
City Munich
ZIP/Postal code 81675
Country Germany
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (10)
GSM7453694 B cells from spleen, scRNA-seq, GEX
GSM7453695 B cells from spleen, scRNA-seq, HTO
GSM7453696 B cells from inguinal lymph nodes, scRNA-seq, GEX
BioProject PRJNA980254

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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE234188_Sample_01_SPL_Velocyto.loom.gz 39.8 Mb (ftp)(http) LOOM
GSE234188_Sample_01_SPL_barcodes.tsv.gz 26.4 Kb (ftp)(http) TSV
GSE234188_Sample_01_SPL_features.tsv.gz 284.1 Kb (ftp)(http) TSV
GSE234188_Sample_01_SPL_matrix.mtx.gz 20.5 Mb (ftp)(http) MTX
GSE234188_Sample_02_LN_Velocyto.loom.gz 28.3 Mb (ftp)(http) LOOM
GSE234188_Sample_02_LN_barcodes.tsv.gz 18.9 Kb (ftp)(http) TSV
GSE234188_Sample_02_LN_features.tsv.gz 284.1 Kb (ftp)(http) TSV
GSE234188_Sample_02_LN_matrix.mtx.gz 15.2 Mb (ftp)(http) MTX
GSE234188_Sample_03_BM_Velocyto.loom.gz 34.5 Mb (ftp)(http) LOOM
GSE234188_Sample_03_BM_barcodes.tsv.gz 20.1 Kb (ftp)(http) TSV
GSE234188_Sample_03_BM_features.tsv.gz 284.1 Kb (ftp)(http) TSV
GSE234188_Sample_03_BM_matrix.mtx.gz 18.2 Mb (ftp)(http) MTX
GSE234188_Sample_04_THY_Velocyto.loom.gz 38.7 Mb (ftp)(http) LOOM
GSE234188_Sample_04_THY_barcodes.tsv.gz 23.3 Kb (ftp)(http) TSV
GSE234188_Sample_04_THY_features.tsv.gz 284.1 Kb (ftp)(http) TSV
GSE234188_Sample_04_THY_matrix.mtx.gz 19.3 Mb (ftp)(http) MTX
GSE234188_Sample_05_Blood_Velocyto.loom.gz 29.2 Mb (ftp)(http) LOOM
GSE234188_Sample_05_Blood_barcodes.tsv.gz 18.9 Kb (ftp)(http) TSV
GSE234188_Sample_05_Blood_features.tsv.gz 284.1 Kb (ftp)(http) TSV
GSE234188_Sample_05_Blood_matrix.mtx.gz 15.7 Mb (ftp)(http) MTX
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