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| Status |
Public on Aug 07, 2023 |
| Title |
RNA-seq datasets for "Temporally Specific Gene Expression and Chromatin Remodeling Programs Regulate a Conserved Pdyn Enhancer" [RNA-seq] |
| Organism |
Rattus norvegicus |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
This dataset contains RNA-seq results from rat embryonic striatal neuronal cultures treated with either vehicle (complete Neurobasal media) or potassium chloride (10mM) for 4 h.
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| Overall design |
This experiment contains 8 biological samples, each of which underwent RNA-seq on an Illumina NextSeq500 instrument. Samples were treated with neurobasal media (vehicle; samples V1, V2, V3, V4), or 10mM KCl (samples K1, K2, K3, K4) . The first letter of sample names denotes acute treatement (V = vehicle, K = KCl). The second digit denotes the unique replicate ID. Forward and reverse paired-end reads are denoted as "R1" or "R2" in raw file names.
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| Contributor(s) |
Phillips RA, Ianov L, Day JJ |
| Citation(s) |
37333110, 37938195 |
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| Submission date |
May 30, 2023 |
| Last update date |
Dec 01, 2023 |
| Contact name |
Jeremy Jason Day |
| E-mail(s) |
jjday@uab.edu
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| Phone |
205-996-8960
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| Organization name |
UAB
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| Department |
Neurobiology
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| Lab |
Day
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| Street address |
1825 University Blvd
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| City |
Birmingham |
| State/province |
AL |
| ZIP/Postal code |
35294 |
| Country |
USA |
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| Platforms (1) |
| GPL20084 |
Illumina NextSeq 500 (Rattus norvegicus) |
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| Samples (8)
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| Relations |
| BioProject |
PRJNA977702 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE233752_Str_4h_KCl_count_matrix.txt.gz |
2.6 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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