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Series GSE232341 Query DataSets for GSE232341
Status Public on Nov 26, 2023
Title Systematic identification of genotype-dependent enhancer variants in eosinophilic esophagitis and atopic dermatitis
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Other
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
 
Citation(s) 38183988
NIH grant(s)
Grant ID Grant title Affiliation Name
P30 AR070549 Cincinnati Rheumatic Diseases Resource Center CHILDREN'S HOSPITAL MEDICAL CENTER Leah Claire Kottyan
R01 AI148276 Genomics of Inflammatory Bowel Disease CHILDREN'S HOSPITAL MEDICAL CENTER Leah Claire Kottyan
R01 DK107502 Mechanisms of genetic risk at 2p23 in Eosinophilic Esophagitis CHILDREN'S HOSPITAL MEDICAL CENTER Leah Claire Kottyan
U01 HG011172 Polygenic Risk Scores for Healthier African American Families CHILDREN'S HOSPITAL MEDICAL CENTER Leah Claire Kottyan
U19 AI070235 Epithelial Genes in Allergic Inflammation CHILDREN'S HOSPITAL MEDICAL CENTER Gurjit K. Khurana Hershey
R01 GM055479 Biochemical and Computational Analysis of Notch signal transduction CHILDREN'S HOSPITAL MEDICAL CENTER Matthew Tyson Weirauch
R01 HG010730 Virus-driven human gene misregulation in disease CHILDREN'S HOSPITAL MEDICAL CENTER Matthew Tyson Weirauch
U01 AI130830 Gene Regulation as a Foundation for Autoimmune Disease Prevention CHILDREN'S HOSPITAL MEDICAL CENTER Matthew Tyson Weirauch
U01 AI150748 Dynamic regulatory network models of human response to influenza virus The Regents of the University of California Emily Miraldi
R01 AI141569 Role of TET1 in airway epithelium and childhood asthma UNIVERSITY OF CALIFORNIA DAVIS Hong Ji
P01 AI150585 Molecular Mechanisms of the Dysregulated Immune Response to Ebola Virus UNIVERSITY OF TEXAS MEDICAL BRANCH AT GALVESTON Mariano A. Garcia-Blanco
R01 AR073228 Transcription Factor Genetics in Lupus CHILDREN'S HOSPITAL MEDICAL CENTER Leah Claire Kottyan
R01 AR073228 Transcription Factor Genetics in Lupus CHILDREN'S HOSPITAL MEDICAL CENTER Matthew Tyson Weirauch
R01 NS099068 Binding of Epstein Barr Virus EBNA2 Unifies Multiple Sclerosis Genetic Mechanisms CHILDREN'S HOSPITAL MEDICAL CENTER Leah Claire Kottyan
R01 NS099068 Binding of Epstein Barr Virus EBNA2 Unifies Multiple Sclerosis Genetic Mechanisms CHILDREN'S HOSPITAL MEDICAL CENTER Matthew Tyson Weirauch
R01 AI024717 Genetic Linkage in Lupus CHILDREN'S HOSPITAL MEDICAL CENTER Leah Claire Kottyan
R01 AI024717 Genetic Linkage in Lupus CHILDREN'S HOSPITAL MEDICAL CENTER Matthew Tyson Weirauch
R01 AI045898 Regulation of Gastrointestinal Eosinophils CHILDREN'S HOSPITAL MEDICAL CENTER Marc E. Rothenberg
R01 AI124355 Genetic and Immunological Dissection of Eosinophilic Esophagitis CHILDREN'S HOSPITAL MEDICAL CENTER Marc E. Rothenberg
Submission date May 11, 2023
Last update date Jun 17, 2024
Contact name Matthew Weirauch
E-mail(s) Matthew.Weirauch@cchmc.org
Organization name Cincinnati Children's Hospital Medical Center
Department Center for Autoimmune Genomics and Etiology (CAGE)
Street address 3333 Burnet Avenue
City Cincinnati
State/province Ohio
ZIP/Postal code 45229-3026
Country USA
 
Platforms (3)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
GPL20301 Illumina HiSeq 4000 (Homo sapiens)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (39)
GSM7328796 EoE/AD RNA-seq TE-7 unstimulated 1
GSM7328797 EoE/AD RNA-seq TE-7 unstimulated 2
GSM7328798 EoE/AD RNA-seq TE-7 unstimulated 3
This SuperSeries is composed of the following SubSeries:
GSE232336 Systematic identification of genotype-dependent enhancer variants in eosinophilic esophagitis and atopic dermatitis [RNA-Seq]
GSE232337 Systematic identification of genotype-dependent enhancer variants in eosinophilic esophagitis and atopic dermatitis [MPRA]
Relations
BioProject PRJNA971636

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE232341_RAW.tar 1.3 Gb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
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