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Series GSE230350 Query DataSets for GSE230350
Status Public on Oct 13, 2023
Title Small molecule-mediated reprogramming of Xenopus blastula stem cells to a neural crest state
Organism Xenopus laevis
Experiment type Expression profiling by high throughput sequencing
Summary Here we describe and validate a protocol for small molecule-mediated induction of the neural crest state
as a new tool for generating this important cell type and facilitating future studies of its development.
 
Overall design We induce a neural crest state using a BMP inhibitor (K02288) and wnt agonist (CHIR99021) and compare
the transcriptome to other neural crest data sets.
Web link https://pubmed.ncbi.nlm.nih.gov/37890713/
 
Contributor(s) Huber P, LaBonne C
Citation(s) 37890713
Submission date Apr 22, 2023
Last update date Jan 12, 2024
Contact name Paul Benjamin Huber
E-mail(s) paul.huber@northwestern.edu
Organization name Northwestern University
Department Molecular Biosciences
Lab LaBonne
Street address 2205 Tech Drive
City Evanston
State/province Illinois
ZIP/Postal code 60208
Country USA
 
Platforms (1)
GPL18936 Illumina HiSeq 2500 (Xenopus laevis)
Samples (6)
GSM7220276 st17 K02288/CHIR explants rep 1
GSM7220277 st17 control explants rep 1
GSM7220278 st17 K02288/CHIR explants rep 2
Relations
BioProject PRJNA960645

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE230350_CONTROLvsK02288_CHIR_deseq.xlsx 6.5 Mb (ftp)(http) XLSX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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