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Series GSE227888 Query DataSets for GSE227888
Status Public on Dec 05, 2023
Title Transcription Factor Co-Expression Mediates Lineage Priming for Embryonic and Extra-Embryonic Differentiation [scRNA-Seq]
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary In this study, we characterised transcriptomes of mESC in different conditions EPSCM and KOSR subsetting them for their single expression of SOX2 or the double expression of SOX2 and GATA6 in these conditions. 2iLIF (sorted only by DAPI negative cells) were used as control.
 
Overall design This study contains 3 conditions (2iLIF, EPSCM and KOSR) and 5 samples (2iLIF Dapi negative cells, EPSCM SOX2+, EPSCM DP, KOSR SOX2+ and KOSR DP) of mouse ESCs that have been in each condition for 4 to 5 passages. The single cells were specifically sorted for Dapi negative and SOX2:GFP+ only or SOX2:GFP and GATA6:mCherry double positive.
 
Contributor(s) Riveiro A, al-Mousawi J, Linneberg-Agerholm M, Proks M, Perera Perez M, Brickman JM
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Submission date Mar 21, 2023
Last update date Dec 06, 2023
Contact name Josh M Brickman
E-mail(s) joshua.brickman@sund.ku.dk
Organization name Copenhagen University
Department reNEW
Lab Brickman
Street address 3B Blegdamsvej
City Copenhagen
ZIP/Postal code 2200
Country Denmark
 
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (1)
GSM7110355 Sample 1
This SubSeries is part of SuperSeries:
GSE227889 Transcription Factor Co-Expression Mediates Lineage Priming for Embryonic and Extra-Embryonic Differentiation
Relations
BioProject PRJNA947238

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE227888_RAW.tar 5.8 Mb (http)(custom) TAR (of CSV, TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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