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| Status |
Public on Jun 01, 2023 |
| Title |
Transcriptomic analysis of REPTOR or FoxO increased activity in muscle tissue using single nuclear RNA-seq analysis of Drosophila thoraces |
| Organism |
Drosophila melanogaster |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Purpose: REPTOR and FoxO are two transcription factors that regulate muscle metabolism. However, these transcription factors share around 40% of target genes. Furthermore, the thorax of adult flies is composed of several tissues including muscle and fat body, making it difficult to discover direct target genes of REPTOR and FoxO specifically in muscle tissue. This experimental approach allows the identification of REPTOR-specific and FoxO-specific target genes in muscle clusters
Methods: snRNA-seq analysis of dissected adult fly thoraces, when an active allele of REPTOR or an active allele of FoxO are overexpressed using a muscle-specific driver (dMef2-Gal4)
Results: Identification of the transcriptional signature of each tissue present in the thorax of adult flies when REPTOR or FoxO are overexpressed in muscle. Discovery of potential direct target genes of REPTOR and FoxO in muscle tissue, as well as metabolic pathways regulated by each transcription factor.
Conclusions: REPTOR and FoxO modulate distinct gene signatures in muscle tissue to regulate metabolism in adult flies.
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| Overall design |
The following genotypes were used: i) control: tub-Gal80ts/+ ; dMef2-GAL4/+. ii) REPTOR gain-of-function: tub-Gal80ts/UAS-REPTOR[ACT]; dMef2-GAL4/+. iii) FoxO gain-of-function: tub-Gal80ts/UAS-FoxO[ACT]; dMef2-GAL4/+. Two technical replicates were collected per genotype, and 30 thoraces were collected for each replicate
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| Web link |
https://pubmed.ncbi.nlm.nih.gov/37582831/
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| Contributor(s) |
Saavedra P, Hu Y, Chen W, Perrimon N |
| Citation(s) |
37582831 |
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| Submission date |
Mar 09, 2023 |
| Last update date |
Oct 26, 2023 |
| Contact name |
Yanhui Hu |
| E-mail(s) |
yanhui_hu@hms.harvard.edu
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| Phone |
617-432-6546
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| Organization name |
Harvard Medical School
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| Department |
Genetics
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| Lab |
Norbert Perrimon
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| Street address |
77 Avenue Louis Pasteur
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| City |
Boston |
| State/province |
MA |
| ZIP/Postal code |
02115 |
| Country |
USA |
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| Platforms (1) |
| GPL25244 |
Illumina NovaSeq 6000 (Drosophila melanogaster) |
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| Samples (6)
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| GSM7090345 |
reptor gain-of-function, replicate 2, scRNAseq |
| GSM7090346 |
foxo gain-of-function, replicate 1, scRNAseq |
| GSM7090347 |
foxo gain-of-function, replicate 2, scRNAseq |
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| Relations |
| BioProject |
PRJNA942938 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE227038_2023-02-21_metadata_Pedro_thorax_10K_final.csv.gz |
278.1 Kb |
(ftp)(http) |
CSV |
| GSE227038_2023-02-21_normalized_count_Pedro_thorax_10K.csv.gz |
58.3 Mb |
(ftp)(http) |
CSV |
| GSE227038_RAW.tar |
45.2 Mb |
(http)(custom) |
TAR (of TSV) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
| Processed data are available on Series record |
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