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| Status |
Public on Jun 30, 2023 |
| Title |
Nontarget-site resistance due to rapid physiological response in 2,4-D resistant Conyza sumatrensis: Reduced 2,4-D translocation and auxin-induced gene expression |
| Organism |
Conyza sumatrensis |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
We used RNAseq to quantify trascript expression from three populations of Conyza sumatrensis before and 5 hours after treatment with 2,4-D. This study investigates different responses between a 2,4-D resistant biotype compared to a 2,4-D sensitive biotype.
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| Overall design |
Comparative transcript expression profiling analysis of RNA-seq data for a herbicide resistant population (r) compared to two sensitive populations (S and T) before and 5 hours after treatment.
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| Web link |
https://onlinelibrary.wiley.com/doi/full/10.1002/ps.7541
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| Contributor(s) |
Souzaa AD, Leal JF, Montgomery JS, Ortiz MF, Araujo AL, Morran S, Figueiredo MR, Langaro AC, Zobiole LH, Nissen SJ, Gaines TA, Pinho CF |
| Citation(s) |
37178347 |
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| Submission date |
Feb 28, 2023 |
| Last update date |
Nov 29, 2023 |
| Contact name |
Todd Gaines |
| E-mail(s) |
todd.gaines@colostate.edu
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| Organization name |
Colorado State University
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| Department |
Agricultural Biology
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| Street address |
1177 Campus Delivery
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| City |
Fort Collins |
| State/province |
CO |
| ZIP/Postal code |
80523 |
| Country |
USA |
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| Platforms (1) |
| GPL33199 |
Illumina NovaSeq 6000 (Conyza sumatrensis) |
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| Samples (22)
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| GSM7073479 |
population R, prior to treatment 4 |
| GSM7073480 |
population R, 5 hours after treatment 1 |
| GSM7073481 |
population R, 5 hours after treatment 2 |
| GSM7073482 |
population R, 5 hours after treatment 3 |
| GSM7073483 |
population S, prior to treatment 1 |
| GSM7073484 |
population S, prior to treatment 2 |
| GSM7073485 |
population S, prior to treatment 3 |
| GSM7073486 |
population S, 5 hours after treatment 1 |
| GSM7073487 |
population S, 5 hours after treatment 2 |
| GSM7073488 |
population S, 5 hours after treatment 3 |
| GSM7073489 |
population S, 5 hours after treatment 4 |
| GSM7073490 |
population T, prior to treatment 1 |
| GSM7073491 |
population T, prior to treatment 2 |
| GSM7073492 |
population T, prior to treatment 3 |
| GSM7073493 |
population T, prior to treatment 4 |
| GSM7073494 |
population T, 5 hours after treatment 1 |
| GSM7073495 |
population T, 5 hours after treatment 2 |
| GSM7073496 |
population T, 5 hours after treatment 3 |
| GSM7073497 |
population T, 5 hours after treatment 4 |
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| Relations |
| BioProject |
PRJNA939725 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE226337_RAW.tar |
12.5 Mb |
(http)(custom) |
TAR (of SF) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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