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Series GSE226006 Query DataSets for GSE226006
Status Public on May 01, 2024
Title Histone lactylation antagonizes senescence and skeletal muscle aging via facilitating gene expression reprogramming [CUT&Tag]
Organism Homo sapiens
Experiment type Other
Summary Epigenetic alterations are among the prominent drivers of cellular senescence and/or aging, intricately orchestrating gene expression programs during these processes. Many studies have investigated the histone modification mechanisms that regulate cellular senescence and aging. In this study, we show that histone lactylation, an identified histone modification that integrates metabolic processes, epigenetic regulation of gene expression and cellular activities in response to internal and external cues, plays a pivotal role in counteracting senescence and mitigating dysfunctions of skeletal muscle in aged mice. Mechanistically, histone lactylation levels markedly decrease during cellular senescence but are restored under hypoxic conditions primarily due to elevated glycolytic activity. The enrichment of histone lactylation at promoters is essential for sustaining the expression of genes involved in the cell cycle and DNA repair pathways, thereby inhibiting cellular senescence. Furthermore, the modulation of enzymes crucial for histone lactylation, including p300 and HDAC1, leads to reduced histone lactylation and accelerated cellular senescence. Consistently, the suppression of glycolysis and the depletion of histone lactylation are also observed during skeletal muscle aging. Running exercise increases the levels of glycolysis and histone lactylation, which in turn upregulate key genes in the DNA repair and proteostasis pathways, thereby helping to preserve the proper function of skeletal muscle. Our study highlights the significant roles of histone lactylation in modulating cellular senescence as well as aging-related tissue function, suggesting that this modification may serve as an innovative biomarker for senescence and provides a promising avenue for antiaging intervention via metabolic manipulation.
 
Overall design CUT&Tag data for IMR90 cells during replicative senescence, upon hypoxia and 2-DG treatment.
 
Contributor(s) Meng F, He J, Zhang X, Tao W
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Submission date Feb 23, 2023
Last update date Oct 12, 2024
Contact name Wei Tao
E-mail(s) weitao@pku.edu.cn
Phone 010-62758903
Organization name Peking University
Department School of Life Sciences
Lab Tao lab
Street address No.5 Yiheyuan Road
City Beijing
ZIP/Postal code 100871
Country China
 
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (12)
GSM7061592 IMR90_Senescent_rep1(CUT&Tag)
GSM7061593 IMR90_Senescent_rep2(CUT&Tag)
GSM7061594 IMR90_Young_rep1(CUT&Tag)
This SubSeries is part of SuperSeries:
GSE226008 Histone lactylation antagonizes senescence and skeletal muscle aging via facilitating gene expression reprogramming
Relations
BioProject PRJNA938243

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE226006_RAW.tar 1010.3 Mb (http)(custom) TAR (of BW, NARROWPEAK)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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