 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Jul 07, 2023 |
| Title |
Comparative Transcriptomic Profiling of Differentially Expressed Genes and Related Metabolic Pathways in a Saudi Wheat Cultivar (Najran) under Salinity Stress |
| Organism |
Triticum aestivum |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
A comparative RNA-Seq analysis was done in root and shoot of Najran wheat cultivar between plants grown under two conditions: control (0 mM NaCl) and salt treatment (200 mM NaCl). The current study revealed differentially expressed genes and various associated biological pathways involved in plant responses to salt stress between the two conditions in the root and shoot plant tissues, providing important insights into the molecular mechanisms underlying salt tolerance in wheat.
|
| |
|
| Overall design |
Global profiling of wheat gene expression (Najran cultivar) was analysed under control and salt treatment in three biological replicates of root and shoot tissues.
|
| Web link |
https://pubmed.ncbi.nlm.nih.gov/37588415/
|
| |
|
| Contributor(s) |
Alyahya N, Taybi T |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Feb 17, 2023 |
| Last update date |
Oct 18, 2023 |
| Contact name |
Norah Abdullah Alyahya |
| E-mail(s) |
noori_198@hotmail.com
|
| Phone |
07426858754
|
| Organization name |
Newcastle University
|
| Street address |
Drummond WEB REQ Tyne
|
| City |
NEWCASTLE UPON TYNE |
| ZIP/Postal code |
NE17RU |
| Country |
United Kingdom |
| |
|
| Platforms (1) |
| GPL25409 |
Illumina NovaSeq 6000 (Triticum aestivum) |
|
| Samples (12)
|
| GSM7050373 |
Shoot, control, rep 1 [21050R-01-04V1] |
| GSM7050374 |
Shoot, control, rep 2 [21050R-01-05V1] |
| GSM7050375 |
Shoot, control, rep 3 [21050R-01-06V1] |
| GSM7050376 |
Root, salt treated, rep 1 [21050R-01-07V1] |
| GSM7050377 |
Root, salt treated, rep 2 [21050R-01-08V1] |
| GSM7050378 |
Root, salt treated, rep 3 [21050R-01-09V1] |
| GSM7050379 |
Shoot, salt treated, rep 1 [21050R-01-10V1] |
| GSM7050380 |
Shoot, salt treated, rep 2 [21050R-01-11V1] |
| GSM7050381 |
Shoot, salt treated, rep 3 [21050R-01-12V1] |
|
| Relations |
| BioProject |
PRJNA936261 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE225565_Control_Shoot_vs_Control_Root.txt.gz |
1.5 Mb |
(ftp)(http) |
TXT |
| GSE225565_Salt_treated_Root_vs_Control_Root.txt.gz |
469.5 Kb |
(ftp)(http) |
TXT |
| GSE225565_Salt_treated_Root_vs_Salt_treated_Shoot.txt.gz |
1.4 Mb |
(ftp)(http) |
TXT |
| GSE225565_Salt_treated_Shoot_vs_Control_Shoot.txt.gz |
281.9 Kb |
(ftp)(http) |
TXT |
| GSE225565_count_table_normalized.txt.gz |
6.9 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
|
|
|
|
 |
Less...
More...