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Series GSE22469 Query DataSets for GSE22469
Status Public on Dec 31, 2012
Title Rhabdomyosarcoma cells (SJRH30) response to hypoxia: time course
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Under hypoxic condition, solid tumor cells are known to involve gene expressions for adopting low O2 condition. We examined chronic hypoxia environment of human rhabdomyosarcoma cell (SJRH30), which is important for understanding characteristic of cancer in the body.
We used microarrays to detail time development of gene expression by using new gene-set analysis called GSMTA and identified up/down-regulated gene sets during hypoxic stress.
Overall design We measured gene expressions at four time-points during 24 hours (0h, 6h, 12h and 24h) under 1% hypoxic condition by Affymetrix GeneChip. GSMTA identified novel differentially-expressed gene set under hypoxic stress at each time point.
Contributor(s) Oshiro S, Ogishima S
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Submission date Jun 21, 2010
Last update date Dec 06, 2018
Contact name Soichi Ogishima
Phone +81 (0)3 5803 4762
Fax +81 (0)3 5803 0247
Organization name Tokyo Medical and Dental University
Department Medical Research Institute
Lab Dept. of Bioinformatics
Street address Yushima 1-5-45
City Bunkyo-ku
State/province Tokyo
ZIP/Postal code 113 8510
Country Japan
Platforms (1)
GPL571 [HG-U133A_2] Affymetrix Human Genome U133A 2.0 Array
Samples (8)
GSM558109 SJRH30 cells at time 0h, biological rep1
GSM558110 SJRH30 cells at time 0h, biological rep2
GSM558111 SJRH30 cells at time 6h, biological rep1
BioProject PRJNA128619

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE22469_RAW.tar 16.1 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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