|
| Status |
Public on Aug 22, 2023 |
| Title |
Whole transcriptome sequencing of E. coli BW25113 wt and nudC knockout strains |
| Organism |
Escherichia coli |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
In the present study we performed total RNA sequencing of E. coli BW25113 wt and nudC knockout strains. RNA-seq analysis revealed that the inactivation of nudC gene in bacteria shows alteration of level of sRNA and protein-coding transcripts mainly associated with bacterial chemotaxis and flagellar assembly pathways.
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| |
|
| Overall design |
Comparative gene expression profiling analysis of RNA-seq data for E. coli BW25113 wt and nudC KO strains.
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| |
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| Contributor(s) |
Vilkaitis G, Mickutė M, Kvederavičiūtė K |
| Citation(s) |
37706681 |
| |
| Submission date |
Feb 06, 2023 |
| Last update date |
Nov 21, 2023 |
| Contact name |
Kotryna Kvederaviciute |
| E-mail(s) |
kotryna.kvederaviciute@mif.vu.lt
|
| Organization name |
Vilnius University
|
| Department |
Life Sciences Center
|
| Lab |
Institute Of Biotechnology
|
| Street address |
Sauletekio av. 7
|
| City |
Vilnius |
| ZIP/Postal code |
10257 |
| Country |
Lithuania |
| |
|
| Platforms (1) |
| GPL32081 |
NextSeq 2000 (Escherichia coli) |
|
| Samples (6)
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| This SubSeries is part of SuperSeries: |
| GSE224608 |
Interplay between bacterial RNA 5'-termini deNADding protein NudC and DEAD-box RNA helicase CsdA in stress-responses |
|
| Relations |
| BioProject |
PRJNA934574 |
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