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Series GSE224294 Query DataSets for GSE224294
Status Public on Feb 03, 2023
Title Generation and characterization of NGLY1 patient-derived midbrain organoids
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary NGlY1 deficiency is an ultra-rare, autosomal recessive genetic disease caused by mutations in the NGLY1 gene encoding N-glycanase one that removes N-linked glycan. Patients with pathogenic mutations in NGLY1 have complex clinical symptoms including global developmental delay, motor disorder, and liver dysfunction. To better understand disease pathogensis and neurological symptoms of NGLY1 deficiency we generated and characterized midbrain organoids using patient-derived iPSCs from two patients with disease causing mutations.
 
Overall design RNA-seq was performed on wild-type midbrain organoids, NGLY1-Knockout and two NGLY1 deficient midbrain organoids generated from patient derived iPSCs.
Web link https://pubmed.ncbi.nlm.nih.gov/36875753/
 
Contributor(s) Zheng W, Abbott J
Citation(s) 36875753
Submission date Feb 01, 2023
Last update date May 05, 2023
Contact name Wei Zheng
E-mail(s) wzheng@mail.nih.gov
Organization name National Institutes of Health
Department National Center for Translational Sciences
Lab TDB Biology
Street address 9800 Medical Center Dr
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platforms (1)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (18)
GSM7019078 Midbrain_WT_5659_1
GSM7019079 Midbrain_WT_5659_2
GSM7019080 Midbrain_WT_5659_3
Relations
BioProject PRJNA930476

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE224294_NGLY1_midbrain_raw_count_matrix.csv.gz 922.1 Kb (ftp)(http) CSV
GSE224294_RAW.tar 3.4 Mb (http)(custom) TAR (of CSV)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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