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| Status |
Public on Mar 02, 2023 |
| Title |
A genome–wide CRISPR activation screen identifies SCREEM a novel SNAI1 super-enhancer demarcated by eRNAs in monocytes |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
Other
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation(s) |
36923642 |
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| Submission date |
Jan 25, 2023 |
| Last update date |
Jun 01, 2023 |
| Contact name |
Adam Williams |
| E-mail(s) |
adam.williams@northwestern.edu
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| Organization name |
Northwestern University
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| Department |
Department of Medicine, Allergy and Immunology
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| Street address |
240 East Huron
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| City |
Chicago |
| State/province |
Ilinois |
| ZIP/Postal code |
60611 |
| Country |
USA |
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| Platforms (2) |
| GPL15520 |
Illumina MiSeq (Homo sapiens) |
| GPL16791 |
Illumina HiSeq 2500 (Homo sapiens) |
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| Samples (26)
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| GSM6971594 |
HBEC3KT cells, transduced with dCAS9-VP64, P65, and sgRNA targeting SCREEM2 promoter, replicate 1 |
| GSM6971595 |
HBEC3KT cells, transduced with dCAS9-VP64, P65, and sgRNA targeting SCREEM2 promoter, replicate 2 |
| GSM6971596 |
HBEC3KT cells, transduced with dCAS9-VP64, P65, and sgRNA targeting SCREEM2 promoter, replicate 3 |
| GSM6971597 |
HBEC3KT cells, transduced with dCAS9-VP64, P65, and sgRNA targeting SCREEM3 promoter, replicate 1 |
| GSM6971598 |
HBEC3KT cells, transduced with dCAS9-VP64, P65, and sgRNA targeting SCREEM3 promoter, replicate 2 |
| GSM6971599 |
HBEC3KT cells, transduced with dCAS9-VP64, P65, and sgRNA targeting SCREEM3 promoter, replicate 3 |
| GSM6971600 |
HBEC3KT cells, transduced with dCAS9-VP64, P65, and non-targeting sgRNA1, replicate 1 |
| GSM6971601 |
HBEC3KT cells, transduced with dCAS9-VP64, P65, and non-targeting sgRNA1, replicate 2 |
| GSM6971602 |
HBEC3KT cells, transduced with dCAS9-VP64, P65, and non-targeting sgRNA1, replicate 3 |
| GSM6971603 |
HBEC3KT cells, PBS, 72hrs, replicate1 |
| GSM6971604 |
HBEC3KT cells, PBS, 72hrs, replicate2 |
| GSM6971605 |
HBEC3KT cells, PBS, 72hrs, replicate3 |
| GSM6971606 |
HBEC3KT cells, TGFB1, 72hrs, replicate1 |
| GSM6971607 |
HBEC3KT cells, TGFB1, 72hrs, replicate2 |
| GSM6971608 |
HBEC3KT cells, TGFB1, 72hrs, replicate3 |
| GSM6971609 |
HBEC3KT cells, transduced with dCAS9-VP64, P65, and non-targeting sgRNA2, replicate 1 |
| GSM6971610 |
HBEC3KT cells, transduced with dCAS9-VP64, P65, and non-targeting sgRNA2, replicate 2 |
| GSM6971611 |
HBEC3KT cells, transduced with dCAS9-VP64, P65, and non-targeting sgRNA2, replicate 3 |
| GSM6971612 |
Screen-library-100X-1 |
| GSM6971613 |
Screen-library-100X-2 |
| GSM6971614 |
Screen-Experiment1-CD44-low |
| GSM6971615 |
Screen-Experiment1-CD44-high |
| GSM6971616 |
Screen-Experiment2-CD44-low |
| GSM6971617 |
Screen-Experiment2-CD44-high |
| GSM6971618 |
Screen-Experiment3-CD44-low |
| GSM6971619 |
Screen-Experiment3-CD44-high |
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| This SuperSeries is composed of the following SubSeries: |
| GSE223681 |
A genome–wide CRISPR activation screen identifies SCREEM a novel SNAI1 super-enhancer demarcated by eRNAs in monocytes [RIBO_RNA] |
| GSE223682 |
A genome–wide CRISPR activation screen identifies SCREEM a novel SNAI1 super-enhancer demarcated by eRNAs in monocytes [SNA1_RNA-Seq] |
| GSE223683 |
A genome–wide CRISPR activation screen identifies SCREEM a novel SNAI1 super-enhancer demarcated by eRNAs in monocytes [gRNA_SCREEN] |
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| Relations |
| BioProject |
PRJNA927278 |
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