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| Status |
Public on Jan 08, 2024 |
| Title |
Autonomous transposons tune their sequences to ensure somatic suppression. |
| Organisms |
Drosophila melanogaster; Homo sapiens; Mus musculus |
| Experiment type |
Other
Expression profiling by high throughput sequencing
|
| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation(s) |
38355802 |
| |
| Submission date |
Jan 19, 2023 |
| Last update date |
Apr 18, 2024 |
| Contact name |
IBRAHIM AVSAR ILIK |
| E-mail(s) |
ilik@molgen.mpg.de
|
| Organization name |
Max-Planck-Institut für molekulare Genetik
|
| Lab |
OWL Aktas
|
| Street address |
Ihnestraße 63-73
|
| City |
Berlin |
| State/province |
Berlin |
| ZIP/Postal code |
14195 |
| Country |
Germany |
| |
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| Platforms (4)
|
| GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
| GPL25244 |
Illumina NovaSeq 6000 (Drosophila melanogaster) |
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| Samples (153)
|
| GSM6943942 |
DHX9-endoBIO_rep2 |
| GSM6943943 |
FUS_rep1 |
| GSM6943944 |
FUS_rep2 |
| GSM6943945 |
GFP-C_rep1 |
| GSM6943946 |
GFP-C_rep2 |
| GSM6943947 |
GFP-N-NLS_rep1 |
| GSM6943948 |
GFP-N-NLS_rep2 |
| GSM6943949 |
GFP-N_rep1 |
| GSM6943950 |
GFP-N_rep2 |
| GSM6943951 |
LUC7L2_rep1 |
| GSM6943952 |
LUC7L2_rep2 |
| GSM6943953 |
LUC7L_rep1 |
| GSM6943954 |
LUC7L_rep2 |
| GSM6943955 |
RBM25_rep1 |
| GSM6943956 |
RBM25_rep2 |
| GSM6943957 |
SAFB1_rep1 |
| GSM6943958 |
SAFB1_rep2 |
| GSM6943959 |
SAFB2_rep1 |
| GSM6943960 |
SAFB2_rep2 |
| GSM6943961 |
SLTM_rep1 |
| GSM6943962 |
SLTM_rep2 |
| GSM6943963 |
SRSF10_rep1 |
| GSM6943964 |
SRSF10_rep2 |
| GSM6943965 |
SRSF11_rep1 |
| GSM6943966 |
SRSF11_rep2 |
| GSM6943967 |
SRSF12_rep1 |
| GSM6943968 |
SRSF12_rep2 |
| GSM6943969 |
SRSF1_rep1 |
| GSM6943970 |
SRSF1_rep2 |
| GSM6943971 |
SRSF2_rep1 |
| GSM6943972 |
SRSF2_rep2 |
| GSM6943973 |
SRSF3_rep1 |
| GSM6943974 |
SRSF3_rep2 |
| GSM6943975 |
SRSF4_rep1 |
| GSM6943976 |
SRSF4_rep2 |
| GSM6943977 |
SRSF5_rep1 |
| GSM6943978 |
SRSF5_rep2 |
| GSM6943979 |
SRSF6_rep1 |
| GSM6943980 |
SRSF6_rep2 |
| GSM6943981 |
SRSF7_rep1 |
| GSM6943982 |
SRSF7_rep2 |
| GSM6943983 |
SRSF8_rep1 |
| GSM6943984 |
SRSF8_rep2 |
| GSM6943985 |
SRSF9_rep1 |
| GSM6943986 |
SRSF9_rep2 |
| GSM6943987 |
TAF15_rep1 |
| GSM6943988 |
TAF15_rep2 |
| GSM6943989 |
TDP43_rep1 |
| GSM6943990 |
TDP43_rep2 |
| GSM6943991 |
TRA2A_rep1 |
| GSM6943992 |
TRA2A_rep2 |
| GSM6943993 |
TRA2B_rep1 |
| GSM6943994 |
TRA2B_rep2 |
| GSM6943995 |
U1-70K_rep1 |
| GSM6943996 |
U1-70K_rep2 |
| GSM6943997 |
U2AF1_rep1 |
| GSM6943998 |
U2AF1_rep2 |
| GSM6943999 |
U2AF2_rep1 |
| GSM6944000 |
U2AF2_rep2 |
| GSM6944001 |
hnRNPC_rep1 |
| GSM6944002 |
hnRNPC_rep2 |
| GSM6944003 |
hnRNPF_rep1 |
| GSM6944004 |
hnRNPF_rep2 |
| GSM6944005 |
hnRNPK_rep1 |
| GSM6944006 |
hnRNPK_rep2 |
| GSM6944007 |
hnRNPR_rep1 |
| GSM6944008 |
hnRNPR_rep2 |
| GSM6944009 |
hnRNPU_rep1 |
| GSM6944010 |
hnRNPU_rep2 |
| GSM6944011 |
wt293_rep1 |
| GSM6944012 |
wt293_rep2 |
| GSM6944013 |
Dmel_SafB_rep1 |
| GSM6944014 |
Dmel_SafB_rep2 |
| GSM6944015 |
Dmel_control_rep1 |
| GSM6944016 |
Dmel_control_rep2 |
| GSM6944017 |
Mus3T3_Safb1_rep1 |
| GSM6944018 |
Mus3T3_Safb1_rep2 |
| GSM6944019 |
Mus3T3_control_rep1 |
| GSM6944020 |
Mus3T3_control_rep2 |
| GSM6944021 |
3T3 cells, control, rep1 |
| GSM6944022 |
3T3 cells, control, rep2 |
| GSM6944023 |
3T3 cells, control, rep3 |
| GSM6944024 |
3T3 cells, triple KD, rep1 |
| GSM6944025 |
3T3 cells, triple KD, rep2 |
| GSM6944026 |
3T3 cells, triple KD, rep3 |
| GSM6944037 |
HEK293 cells, control, rep1 |
| GSM6944038 |
HEK293 cells, control, rep2 |
| GSM6944039 |
HEK293 cells, control, rep3 |
| GSM6944040 |
HEK293 cells, SAFB1 KD, rep1 |
| GSM6944041 |
HEK293 cells, SAFB1 KD, rep2 |
| GSM6944042 |
HEK293 cells, SAFB1 KD, rep3 |
| GSM6944043 |
HEK293 cells, SAFB2 KD, rep1 |
| GSM6944044 |
HEK293 cells, SAFB2 KD, rep2 |
| GSM6944045 |
HEK293 cells, SAFB2 KD, rep3 |
| GSM6944046 |
HEK293 cells, SLTM KD, rep1 |
| GSM6944047 |
HEK293 cells, SLTM KD, rep2 |
| GSM6944048 |
HEK293 cells, SLTM KD, rep3 |
| GSM6944049 |
HEK293 cells, triple KD, rep1 |
| GSM6944050 |
HEK293 cells, triple KD, rep2 |
| GSM6944051 |
HEK293 cells, triple KD, rep3 |
| GSM6944069 |
HeLa cells, control, rep1 |
| GSM6944070 |
HeLa cells, control, rep2 |
| GSM6944071 |
HeLa cells, control, rep3 |
| GSM6944072 |
HeLa cells, triple KD, rep1 |
| GSM6944073 |
HeLa cells, triple KD, rep2 |
| GSM6944074 |
HeLa cells, triple KD, rep3 |
| GSM6944075 |
S2 cells, control, rep1 |
| GSM6944076 |
S2 cells, control, rep2 |
| GSM6944077 |
S2 cells, control, rep3 |
| GSM6944078 |
S2 cells, safb KD, rep1 |
| GSM6944079 |
S2 cells, safb KD, rep2 |
| GSM6944080 |
S2 cells, safb KD, rep3 |
| GSM7824327 |
control_1H4_rep1 |
| GSM7824328 |
control_1H4_rep2 |
| GSM7824329 |
control_1H4_rep3 |
| GSM7824330 |
control_DHX9_rep1 |
| GSM7824331 |
control_DHX9_rep2 |
| GSM7824332 |
control_DHX9_rep3 |
| GSM7824333 |
tripleKD_1H4_rep1 |
| GSM7824334 |
tripleKD_1H4_rep2 |
| GSM7824335 |
tripleKD_1H4_rep3 |
| GSM7824336 |
tripleKD_DHX9_rep1 |
| GSM7824337 |
tripleKD_DHX9_rep2 |
| GSM7824338 |
tripleKD_DHX9_rep3 |
| GSM7824345 |
control siRNA treated HEK293 cells |
| GSM7824346 |
SAFB1, SAFB2 and SLTM siRNA treated HEK293 cells |
| GSM7824617 |
HCT116 cells, control, rep1 |
| GSM7824618 |
HCT116 cells, control, rep2 |
| GSM7824619 |
HCT116 cells, control, rep3 |
| GSM7824620 |
HCT116 cells, SAFB1+SLTM KD, rep1 |
| GSM7824621 |
HCT116 cells, SAFB1+SLTM KD, rep2 |
| GSM7824622 |
HCT116 cells, SAFB1+SLTM KD, rep3 |
| GSM7824655 |
HEK293 cells, nuclear fraction, control, rep1 |
| GSM7824656 |
HEK293 cells, nuclear fraction, control, rep2 |
| GSM7824657 |
HEK293 cells, nuclear fraction, control, rep3 |
| GSM7824658 |
HEK293 cells, nuclear fraction, triple KD, rep1 |
| GSM7824659 |
HEK293 cells, nuclear fraction, triple KD, rep2 |
| GSM7824660 |
HEK293 cells, nuclear fraction, triple KD, rep3 |
| GSM7824661 |
HEK293 cells, cytoplasmic fraction, control, rep1 |
| GSM7824662 |
HEK293 cells, cytoplasmic fraction, control, rep2 |
| GSM7824663 |
HEK293 cells, cytoplasmic fraction, control, rep3 |
| GSM7824664 |
HEK293 cells, cytoplasmic fraction, triple KD, rep1 |
| GSM7824665 |
HEK293 cells, cytoplasmic fraction, triple KD, rep2 |
| GSM7824666 |
HEK293 cells, cytoplasmic fraction, triple KD, rep3 |
| GSM7824667 |
HEK293 cells, whole cell extract, control, rep1 |
| GSM7824668 |
HEK293 cells, whole cell extract, control, rep2 |
| GSM7824669 |
HEK293 cells, whole cell extract, control, rep3 |
| GSM7824670 |
HEK293 cells, whole cell extract, triple KD, rep1 |
| GSM7824671 |
HEK293 cells, whole cell extract, triple KD, rep2 |
| GSM7824672 |
HEK293 cells, whole cell extract, triple KD, rep3 |
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| This SuperSeries is composed of the following SubSeries:
|
| GSE223253 |
Autonomous transposons tune their sequences to ensure somatic suppression [FLASH] |
| GSE223254 |
Autonomous transposons tune their sequences to ensure somatic suppression [polyA_3T3] |
| GSE223257 |
Autonomous transposons tune their sequences to ensure somatic suppression [polyA_HEK293] |
| GSE223261 |
Autonomous transposons tune their sequences to ensure somatic suppression [polyA_HeLa] |
| GSE223262 |
Autonomous transposons tune their sequences to ensure somatic suppression [polyA_S2] |
| GSE244699 |
Autonomous transposons tune their sequences to ensure somatic suppression [SAFKD_1H4_DHX9_FLASH] |
| GSE244701 |
Autonomous transposons tune their sequences to ensure somatic suppression [directRNA_HEK293] |
| GSE244708 |
Autonomous transposons tune their sequences to ensure somatic suppression [polyA_HCT116] |
| GSE244711 |
Autonomous transposons tune their sequences to ensure somatic suppression [totalRNA_HEK293_fractionation] |
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| Relations |
| BioProject |
PRJNA925489 |
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