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GEO accession:
Series GSE223203
Query DataSets for GSE223203
Status
Public on Jan 01, 2024
Title
de novo methylation by Clr4
Organism
Schizosaccharomyces pombe
Experiment type
Genome binding/occupancy profiling by high throughput sequencing
Summary
To investigate the role of de novo methylation by Clr4, we performed the reintroduction of Clr4 and ecopic insertion of lnc230
Overall design
Flag-Clr4 ChIPseq on S pombe.
Contributor(s)
Khanduja J
,
Motamedi M
,
Joh R
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Submission date
Jan 18, 2023
Last update date
Jan 01, 2024
Contact name
Richard Joh
E-mail(s)
rich.i.joh@gmail.com
Organization name
Mass General Hospital
Department
Center for Cancer Research
Street address
149 13th St
City
Charlestown
State/province
MA
ZIP/Postal code
02129
Country
USA
Platforms (1)
GPL23689
NextSeq 550 (Schizosaccharomyces pombe)
Samples (44)
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GSM6942727
clr4-input-rep1-Ec230
GSM6942728
wt-input-rep1-Ec230
GSM6942729
ago1-C1-input-rep1-Ec230
GSM6942730
clr4-input-rep2-Ec230
GSM6942731
wt-input-rep2-Ec230
GSM6942732
ago1-C1-input-rep2-Ec230
GSM6942733
ago1-C2-input-rep2-Ec230
GSM6942734
clr4-input-rep3-Ec230
GSM6942735
wt-input-rep3-Ec230
GSM6942736
ago1-C1-input-rep3-Ec230
GSM6942737
ago1-C2-input-rep3-Ec230
GSM6942739
clr4-input-rep5-Ec230
GSM6942740
wt-input-rep5-Ec230
GSM6942741
ago1-C1-input-rep5-Ec230
GSM6942742
ago1-C2-input-rep5-Ec230
GSM6942743
ago1clr4-Clr4_ChIP-rep1-Clr4
GSM6942744
wt-Clr4_ChIP-rep1-Clr4
GSM6942745
ago1-Clr4_ChIP-rep1-Clr4
GSM6942746
ago1-RI-C3-Clr4_ChIP-rep1-reintro
GSM6942747
ago1-RI-C4-Clr4_ChIP-rep1-reintro
GSM6942748
ago1clr4-Clr4_ChIP-rep3-Clr4
GSM6942749
wt-Clr4_ChIP-rep3-Clr4
GSM6942750
ago1-Clr4_ChIP-rep3-Clr4
GSM6942751
ago1-RI-C3-Clr4_ChIP-rep3-reintro
GSM6942752
ago1-RI-C4-Clr4_ChIP-rep3-reintro
GSM6942753
ago1-RI-C11-Clr4_ChIP-rep3-reintro
GSM6942755
ago1clr4-input-rep3-Clr4
GSM6942756
wt-input-rep3-Clr4
GSM6942757
ago1-input-rep3-Clr4
GSM6942758
ago1-RI-C3-input-rep3-reintro
GSM6942759
ago1-RI-C4-input-rep3-reintro
GSM6942760
ago1-RI-C11-input-rep3-reintro
GSM6942761
ago1clr4-input-rep2-Clr4
GSM6942762
wt-input-rep2-Clr4
GSM6942763
ago1-input-rep2-Clr4
GSM6942764
ago1-RI-C3-input-rep2-reintro
GSM6942765
ago1-RI-C4-input-rep2-reintro
GSM6942766
ago1-RI-C11-input-rep2-reintro
GSM6942767
ago1clr4-Clr4_ChIP-rep2-Clr4
GSM6942768
wt-Clr4_ChIP-rep2-Clr4
GSM6942769
ago1-Clr4_ChIP-rep2-Clr4
GSM6942770
ago1-RI-C3-Clr4_ChIP-rep2-reintro
GSM6942771
ago1-RI-C4-Clr4_ChIP-rep2-reintro
GSM6942773
ago1-RI-C11-Clr4_ChIP-rep2-reintro
Relations
BioProject
PRJNA925211
Download family
Format
SOFT formatted family file(s)
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MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE223203_RAW.tar
46.3 Mb
(http)
(custom)
TAR (of BW)
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
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