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Series GSE221912 Query DataSets for GSE221912
Status Public on Dec 29, 2022
Title Myoscaffolds reveal laminin scarring is detrimental for stem cell function while sarcospan induces compensatory fibrosis
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary We developed an on-slide decellularization approach to generate acellular extracellular matrix (ECM) scaffolds that can be repopulated with various cell types to interrogate cell-ECM interactions. Using this platform, we investigated whether fibrotic ECM scarring affected human skeletal muscle progenitor cell (SMPC) functions that are essential for myoregeneration. SMPCs exhibited robust adhesion, motility, and differentiation on healthy muscle-derived myoscaffolds. All SPMC interactions with fibrotic myoscaffolds from dystrophic muscle were severely blunted including reduced motility rate and migration. Furthermore, SMPCs were unable to remodel laminin dense fibrotic scars within diseased myoscaffolds. Proteomics and structural analysis revealed that excessive collagen deposition alone is not pathological, and can be compensatory, as revealed by overexpression of sarcospan and its associated ECM receptors in dystrophic muscle. Our in vivo data also supported that ECM remodeling is important for SMPC engraftment and that fibrotic scars may represent one barrier to efficient cell therapy.
 
Overall design Sequencing pf total RNA prepared from SMPCs cultured (5 days) on WT and mdx myoscaffolds.
 
Contributor(s) Stearns-Reider KM, Crosbie RH
Citation(s) 36922514
Submission date Dec 29, 2022
Last update date Jul 14, 2023
Contact name Yerbol Z. Kurmangaliyev
Organization name University of California, Los Angeles
Street address 675 Charles E. Young Drive South
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Platforms (1)
GPL21290 Illumina HiSeq 3000 (Homo sapiens)
Samples (5)
GSM6909589 wild-type, replicate 1
GSM6909590 wild-type, replicate 2
GSM6909591 wild-type, replicate 3
Relations
BioProject PRJNA916716

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Supplementary file Size Download File type/resource
GSE221912_deg0.xlsx 1.1 Mb (ftp)(http) XLSX
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Raw data are available in SRA
Processed data are available on Series record

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