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| Status |
Public on Dec 17, 2023 |
| Title |
A COMPASS histone H3K4 trimethyltransferase pentamer transactivates drought tolerance and growth/biomass production in Populus trichocarpa |
| Organism |
Populus trichocarpa |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
ChIP-seq was carried out with H3K4me3 antibody using Stem differentiating xylem from wild-type plants under drought conditions
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| Overall design |
Twelve samples were analyzed: 3 biological replicates of input DNA and IP DNA under drought treatment, 3 biological replicates of input DNA and IP DNA under well-watered treatment (Control for drought treatment)
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| Contributor(s) |
Zhang B |
| Citation(s) |
38095236 |
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| Submission date |
Dec 26, 2022 |
| Last update date |
Mar 17, 2024 |
| Contact name |
Baofeng Zhang |
| E-mail(s) |
zhangbaofeng1993@126.com, 949393323@qq.com
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| Organization name |
Northeast Forestry University
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| Department |
College of Forestry
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| Street address |
Hexing Road 26#, Xiangfang District
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| City |
Harbin |
| ZIP/Postal code |
150040 |
| Country |
China |
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| Platforms (1) |
| GPL26322 |
Illumina NextSeq 500 (Populus trichocarpa) |
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| Samples (12)
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| GSM6896003 |
Wild-type plants under well-watered conditions, IP_DNA, K4 rep 1 |
| GSM6896004 |
Wild-type plants under well-watered conditions, IP_DNA, K4 rep 2 |
| GSM6896005 |
Wild-type plants under well-watered conditions, IP_DNA, K4 rep 3 |
| GSM6896006 |
Wild-type plants under drought conditions, IP_DNA, K4 rep 1 |
| GSM6896007 |
Wild-type plants under drought conditions, IP_DNA, K4 rep 2 |
| GSM6896008 |
Wild-type plants under drought conditions, IP_DNA, K4 rep 3 |
| GSM6896009 |
Wild-type plants under well-watered conditions, input_DNA, K4 rep1 |
| GSM6896010 |
Wild-type plants under well-watered conditions, input_DNA, K4 rep 2 |
| GSM6896011 |
Wild-type plants under well-watered conditions, input_DNA, K4 rep 3 |
| GSM6896012 |
Wild-type plants under drought conditions, input_DNA, K4 rep1 |
| GSM6896013 |
Wild-type plants under drought conditions, input_DNA, K4 rep 2 |
| GSM6896014 |
Wild-type plants under drought conditions, input_DNA, K4 rep 3 |
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| Relations |
| BioProject |
PRJNA916084 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE221771_RAW.tar |
339.5 Mb |
(http)(custom) |
TAR (of BW, NARROWPEAK) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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