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Series GSE221369 Query DataSets for GSE221369
Status Public on Jul 11, 2023
Title SOCS3 deletion in effector T cells confers an anti-tumorigenic role of IL-6 to the pro-tumorigenic cytokine [scRNA-seq]
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Interleukin (IL)-6 is abundantly expressed in the tumor microenvironment and is associated with poor patient outcomes. Here, we demonstrate that the deletion of the suppressor of cytokine signaling 3 (SOCS3) in T cells potentiates anti-tumor immune responses by conferring the anti-tumorigenic function of IL-6 in mouse and human models. In Socs3-deficient CD8+ T cells, IL-6 upregulates the expression of type I interferon (IFN)-regulated genes and enhances the anti-tumor effector function of T cells, while also modifying mitochondrial fitness to increase mitochondrial membrane potential and reactive oxygen species (ROS) levels and to promote metabolic glycolysis in the energy state. Furthermore, Socs3 deficiency reduces regulatory T cells and increases T helper 1 (Th1) cells. SOCS3 knockdown in human chimeric antigen receptor T (CAR-T) cells exhibits a strong anti-tumor response in humanized mice. Thus, genetic disruption of SOCS3 offers an avenue to improve the therapeutic efficacy of adoptive T cell therapy.
 
Overall design MC38 cells, murine colon adenocarcinoma cells, were subcutaneously injected in the flanks of WT Socs3f/f or Cd4Cre Socs3f/f mice. CD3e+ TCRb+ T cells were isolated from tumor mass 12 days after tumor inoculation for scRNAseq analysis.
 
Contributor(s) Mise-Omata S, Ando M, Srirat T, Nakagawara K, Hayakawa T, Iizuka-Koga M, Nishimasu H, Nureki O, Ito M, Yoshimura A
Citation(s) 37582370
Submission date Dec 19, 2022
Last update date Oct 10, 2023
Contact name Setsuko Mise-Omata
E-mail(s) setsukomise@gmail.com
Phone +81353633767
Organization name Keio University
Department Department of Microbiology and Immunology
Lab Yoshimura's Laboratory
Street address 35 Shinanomachi
City Shinjuku-ku
State/province Tokyo
ZIP/Postal code 1608582
Country Japan
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (1)
GSM6862039 SOCS3WT_KO_Tcells_scRNAseq
This SubSeries is part of SuperSeries:
GSE235117 SOCS3 deletion in effector T cells confers an anti-tumorigenic role of IL-6 to the pro-tumorigenic cytokine
Relations
BioProject PRJNA913990

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE221369_RAW.tar 46.7 Mb (http)(custom) TAR (of MTX, TSV)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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