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Series GSE220811 Query DataSets for GSE220811
Status Public on Dec 13, 2022
Title Efficient in vivo Genome Editing Prevents Hypertrophic Cardiomyopathy in Mice [Amplified_cDNA]
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Dominant pathogenic variants encoding amino acid substitutions in cardiac myosin heavy chain cause hypertrophic cardiomyopathy (HCM), a currently incurable disorder that increases risk for stroke, heart failure, and sudden cardiac death. We assessed the efficacy of two different genetic therapies, an adenine base editor (ABE8e) and a potent Cas9 nuclease delivered by AAV9, to prevent disease in mice carrying the heterozygous HCM pathogenic variant myosin R403Q. One dose of dual AAV9 vectors, each carrying one half of RNA-guided ABE8e, corrected the pathogenic variant in ≥70% of ventricular cardiomyocytes and maintained durable, normal cardiac structure and function. An additional dose provided more global editing especially in the atria but also increased bystander editing. AAV9 delivery of RNA-guided Cas9 nuclease effectively inactivated the pathogenic allele, albeit with dose-dependent toxicities, necessitating a narrow therapeutic window to maintain health. These preclinical studies demonstrate considerable potential for single-dose genetic therapies to correct or silence pathogenic variants and prevent the development of HCM.
 
Overall design Editing efficiency of the targeted MYH6 R403Q allele and insertions/deletions (indels) after a single or multiple does of AAV9 ABE8e injection was assessed by sequencing PCR amplified cDNA of Myh6 derived from RNA extracted from specific cardiac chambers.
 
Contributor(s) Daniel R, Gregory A. N, Hiroko W, Mingyue L, Joshua M. G, Aditya R, Daniel M. D, David A. C, Júlia D C. M, Sajeev K, Lukas C, David C. P, Nerea Z, Luk V, David R. L, Jonathan G. S, Christine S
Citation(s) 36797483
Submission date Dec 13, 2022
Last update date Mar 14, 2023
Contact name Daniel DeLaughter
Organization name Harvard Medical School
Department Genetics
Lab Seidman
Street address 7 Avenue Louis Pasteur
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platforms (1)
GPL16417 Illumina MiSeq (Mus musculus)
Samples (78)
GSM6820488 1096_Lva_none
GSM6820489 1096_RV_none
GSM6820490 2243_LV  _BoostedABE
This SubSeries is part of SuperSeries:
GSE220851 Efficient in vivo genome editing prevents hypertrophic cardiomyopathy in mice
Relations
BioProject PRJNA911609

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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE220811_Fig5_Amplified_cDNA_processed_data.xlsx 28.7 Kb (ftp)(http) XLSX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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