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| Status |
Public on Jul 27, 2023 |
| Title |
FUBP1 is a core splicing factor that facilitates 3' splice site recognition and splicing of long introns |
| Organisms |
Homo sapiens; synthetic construct |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation(s) |
37506698 |
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| Submission date |
Dec 06, 2022 |
| Last update date |
Oct 27, 2023 |
| Contact name |
Stefanie Ebersberger |
| E-mail(s) |
s.ebersberger@imb-mainz.de
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| Organization name |
Institute of Molecular Biology
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| Lab |
Koenig Lab
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| Street address |
Ackermannweg 4
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| City |
Mainz |
| ZIP/Postal code |
55128 |
| Country |
Germany |
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| Platforms (3) |
| GPL11154 |
Illumina HiSeq 2000 (Homo sapiens) |
| GPL18573 |
Illumina NextSeq 500 (Homo sapiens) |
| GPL19424 |
Illumina NextSeq 500 (synthetic construct) |
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| Samples (61)
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| GSM6793159 |
imb_koenig_2018_18, HeLa, WT, 2018, rep1 |
| GSM6793160 |
imb_koenig_2018_18, HeLa, WT, 2018, rep2 |
| GSM6793161 |
imb_koenig_2018_18, HeLa, WT, 2018, rep3 |
| GSM6793162 |
imb_koenig_2018_18, HeLa, WT, 2018, rep4 |
| GSM6793163 |
imb_koenig_2020_12, RPE1, WT, rep1 |
| GSM6793164 |
imb_koenig_2020_12, RPE1, WT, rep2 |
| GSM6793165 |
imb_koenig_2020_12, RPE1, WT, rep3 |
| GSM6793166 |
imb_koenig_2020_12, RPE1, WT, rep4 |
| GSM6793167 |
imb_koenig_2020_12, RPE1, FUBP1 knockout, rep1 |
| GSM6793168 |
imb_koenig_2020_12, RPE1, FUBP1 knockout, rep2 |
| GSM6793169 |
imb_koenig_2020_12, RPE1, FUBP1 knockout, rep3 |
| GSM6793170 |
imb_koenig_2020_12, RPE1, FUBP1 knockout, rep4 |
| GSM6793171 |
imb_koenig_2020_12, RPE1, FUBP1 N-mut, rep1 |
| GSM6793172 |
imb_koenig_2020_12, RPE1, FUBP1 N-mut, rep2 |
| GSM6793173 |
imb_koenig_2020_12, RPE1, FUBP1 N-mut, rep3 |
| GSM6793174 |
imb_koenig_2020_12, RPE1, FUBP1 N-mut, rep4 |
| GSM6793308 |
imb_koenig_2018_01_sub12, in vitro oligo library, 50nM U2AF2, rep1 |
| GSM6793309 |
imb_koenig_2018_01_sub12, in vitro oligo library, 50nM U2AF2, rep2 |
| GSM6793310 |
imb_koenig_2018_01_sub12, in vitro oligo library, 50nM U2AF2, rep3 |
| GSM6793311 |
imb_koenig_2018_01_sub12, in vitro oligo library, 50nM U2AF2 + 50nM FUPB1, rep1 |
| GSM6793312 |
imb_koenig_2018_01_sub12, in vitro oligo library, 50nM U2AF2 + 50nM FUPB1, rep2 |
| GSM6793313 |
imb_koenig_2018_01_sub12, in vitro oligo library, 50nM U2AF2 + 50nM FUPB1, rep3 |
| GSM6793314 |
imb_koenig_2018_01_sub12, in vitro oligo library, 50nM U2AF2 + 300nM FUPB1, rep1 |
| GSM6793315 |
imb_koenig_2018_01_sub12, in vitro oligo library, 50nM U2AF2 + 300nM FUPB1, rep2 |
| GSM6793316 |
imb_koenig_2018_01_sub12, in vitro oligo library, 50nM U2AF2 + 300nM FUPB1, rep3 |
| GSM6793317 |
imb_koenig_2018_01_sub16, in vitro transcript library, 50nM U2AF2, rep1 |
| GSM6793318 |
imb_koenig_2018_01_sub16, in vitro transcript library, 50nM U2AF2, rep2 |
| GSM6793319 |
imb_koenig_2018_01_sub16, in vitro transcript library, 50nM U2AF2, rep3 |
| GSM6793320 |
imb_koenig_2018_01_sub16, in vitro transcript library, 50nM U2AF2 + 50nM FUBP1, rep1 |
| GSM6793321 |
imb_koenig_2018_01_sub16, in vitro transcript library, 50nM U2AF2 + 50nM FUBP1, rep2 |
| GSM6793322 |
imb_koenig_2018_01_sub16, in vitro transcript library, 50nM U2AF2 + 50nM delta N FUBP1, rep1 |
| GSM6793323 |
imb_koenig_2018_01_sub16, in vitro transcript library, 50nM U2AF2 + 50nM delta N FUBP1, rep2 |
| GSM6793324 |
imb_koenig_2018_01_sub16, in vitro transcript library, 50nM U2AF2 + 50nM N74 FUBP1, rep1 |
| GSM6793325 |
imb_koenig_2018_01_sub16, in vitro transcript library, 50nM U2AF2 + 50nM N74 FUBP1, rep2 |
| GSM6793326 |
FUBP1 in vivo iCLIP, HeLa, rep1 |
| GSM6793327 |
FUBP1 in vivo iCLIP, HeLa, rep2 |
| GSM6793328 |
FUBP1 in vivo iCLIP, HeLa, rep3 |
| GSM6793329 |
FUBP1 in vivo iCLIP, HeLa, rep4 |
| GSM6793330 |
FUBP1 in vivo iCLIP, HeLa, rep5 |
| GSM6793331 |
SF1 in vivo iCLIP, HeLa, rep1 |
| GSM6793332 |
SF1 in vivo iCLIP, HeLa, rep2 |
| GSM6793333 |
SF1 in vivo iCLIP, HeLa, rep3 |
| GSM6793334 |
SF3B1 in vivo iCLIP, HeLa, rep1 |
| GSM6793335 |
SF3B1 in vivo iCLIP, HeLa, rep2 |
| GSM6793336 |
SF3B1 in vivo iCLIP, HeLa, rep3 |
| GSM6793337 |
SF3B1 in vivo iCLIP, HeLa, rep4 |
| GSM6793338 |
U2AF2 in vivo iCLIP in FUBP1 KD, HeLa, 2017, rep1 |
| GSM6793339 |
U2AF2 in vivo iCLIP in FUBP1 KD, HeLa, 2017, rep2 |
| GSM6793340 |
U2AF2 in vivo iCLIP in FUBP1 KD, HeLa, 2017, rep3 |
| GSM6793341 |
U2AF2 in vivo iCLIP in FUBP1 KD, HeLa, 2017, rep4 |
| GSM6793342 |
U2AF2 in vivo iCLIP, HeLa, 2017, rep1 |
| GSM6793343 |
U2AF2 in vivo iCLIP, HeLa, 2017, rep2 |
| GSM6793344 |
U2AF2 in vivo iCLIP, HeLa, 2017, rep3 |
| GSM6793345 |
U2AF2 in vivo iCLIP, HeLa, 2017, rep4 |
| GSM6793346 |
U2AF2 in vivo iCLIP, HeLa, 2019, rep1 |
| GSM6793347 |
U2AF2 in vivo iCLIP, HeLa, 2019, rep2 |
| GSM6793348 |
PTBP1 in vivo iCLIP, HeLa, rep1 |
| GSM6793349 |
PTBP1 in vivo iCLIP, HeLa, rep2 |
| GSM6793350 |
PTBP1 in vivo iCLIP, HeLa, rep3 |
| GSM6793351 |
PTBP1 in vivo iCLIP, HeLa, rep4 |
| GSM6793352 |
PTBP1 in vivo iCLIP, HeLa, rep5 |
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| This SuperSeries is composed of the following SubSeries: |
| GSE220180 |
FUBP1 is a core splicing factor that facilitates 3' splice site recognition and splicing of long introns [RNA-Seq] |
| GSE220183 |
FUBP1 is a core splicing factor that facilitates 3' splice site recognition and splicing of long introns [In vitro iCLIP] |
| GSE220184 |
FUBP1 is a core splicing factor that facilitates 3' splice site recognition and splicing of long introns [In vivo iCLIP] |
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| Relations |
| BioProject |
PRJNA909182 |
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